View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_23 (Length: 395)
Name: NF15296_low_23
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 379
Target Start/End: Complemental strand, 41966495 - 41966133
Alignment:
| Q |
14 |
agataaagttaatagagttggtgtatatttagtttcacttttggagac-acaaaattgatgtagaattgattttgatatatttaaatatgtttgcgtata |
112 |
Q |
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| T |
41966495 |
agataaagttaatagagttggtgtatatttagtttcacttttagagacgacaaaattgatgtagaattaattttgatatatttaaatatgtttgcgtata |
41966396 |
T |
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| Q |
113 |
attgaatttacctcaagaactgattataactcgaacacaaaatttaaagtttttgcttcttcaattcaattttaacatcaaatttattgttgcttcaatt |
212 |
Q |
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| T |
41966395 |
attgaatttacctcaagaactgattatagctcaaacacaaaatttaaagtttttgcttcttcaattgaattttaacatcaaatttattgtttcttcaatt |
41966296 |
T |
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| Q |
213 |
cacattgattcaagtcataactcatttttagtagaaaacaattttacaaaatcaactaattcaaattcaannnnnnnncaccgcataatcaaacacatac |
312 |
Q |
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| T |
41966295 |
cacattgattcaagtcataactcatttttagtaaaaaacaattttacaaaatcaactaattcaaattcaattttttttcaccgcataatcaaacacatac |
41966196 |
T |
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| Q |
313 |
ttgaattataaaatgaattaaacttcggcaagaaaaacttaccaggagaagagagaagacaaggaat |
379 |
Q |
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| T |
41966195 |
ttg----ataaaatgaattgaacttcggcaagaaaaacttaccaggagaagagagaagacaaggaat |
41966133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 1227832 - 1227680
Alignment:
| Q |
66 |
aattgatgtagaattgattttgatatatttaaatatgtttgcgtataattgaatttacctcaagaactgattataactcgaacacaaaatttaaagtttt |
165 |
Q |
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| T |
1227832 |
aattgatgtaaaattgattttgatatatttaaatgtgttcgcgtataattgaatttacctcaaaaaccgattataactcgaagacaaaatttaaagtttt |
1227733 |
T |
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| Q |
166 |
tgcttcttcaattcaattttaacatcaaatttattgttgcttcaattcacatt |
218 |
Q |
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| T |
1227732 |
tgcttctacaattgatttttagcatcaaatttattgttacttcaattcacatt |
1227680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 1227652 - 1227604
Alignment:
| Q |
234 |
tcatttttagtagaaaacaattttacaaaatcaactaattcaaattcaa |
282 |
Q |
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| T |
1227652 |
tcatttttaatagaaaccaattttacaaaatcaactaattcaaaatcaa |
1227604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 379
Target Start/End: Complemental strand, 1227546 - 1227515
Alignment:
| Q |
348 |
aacttaccaggagaagagagaagacaaggaat |
379 |
Q |
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| T |
1227546 |
aacttaccaggagaagagagaagacaaggaat |
1227515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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