View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_24 (Length: 391)
Name: NF15296_low_24
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 61762 - 61401
Alignment:
| Q |
12 |
aagaagtattgatatctcaacataaaaaattgaacgacttataaaaccaaactaaaaacaacttatgatgatataataattttgtttctccctaaaccaa |
111 |
Q |
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| T |
61762 |
aagaagtattgatatctgaacataaaaaattgaaccacttataaaaccaaactaaaaacaacttatgatgatataataattttgtttcttcctaaaccaa |
61663 |
T |
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| Q |
112 |
attaacacttgtttttgggtggttggagcattaaggaaggtactacttttgtttgtgtggtcggttattttttgtctgaaattaacattatagaaaatta |
211 |
Q |
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| T |
61662 |
attaacacttgtttttgggtggttggagcattaaggaaggtactacttttgtttgtgtggtcggttattttttgtctgaaattaacattatagaaaatta |
61563 |
T |
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| Q |
212 |
ctatacatgcgtatttttctccaagaatttggtagaaatgaatgaaattagaaagagaaatgattggtgtgtagagaaagaatgaatgggtgatagataa |
311 |
Q |
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| T |
61562 |
ctatacatgcgtatttttctccaagaatttggtagaaatgaatgaaattagaaagagaaatgattggtgtgtagagaaagaatgaatgggtgatagataa |
61463 |
T |
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| Q |
312 |
aacttatactgtccgtaaatttcgatatccaaaggtcccaatttgttgtcatggttgttata |
373 |
Q |
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| T |
61462 |
aacttattctgtccgtaaatttcgatatccaaaggtcccaatttgttgtcatggttgttata |
61401 |
T |
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