View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_27 (Length: 365)
Name: NF15296_low_27
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 28865170 - 28865507
Alignment:
| Q |
12 |
aatactcctgcttctgagtaatatgtattgaagttaaggtttaaactaactagttgagatatttaaaagttttatttttgagggagagatatttaaaata |
111 |
Q |
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| T |
28865170 |
aatactcctacttctgagtaatatgtattgaagttatggtttaaactaactagttgagatatttaaaagttttatttttgagggagagatatttaaaata |
28865269 |
T |
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| Q |
112 |
ctacaataatagtatagcatactccatgaaggttgattaccaaacattttctaagaaaaagtttgattaccaaacacatttattttggttctatgagatt |
211 |
Q |
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| T |
28865270 |
ctacaataatagtatagcatactccatgaaggttgattaccaaacattttctaagaaaaagtttgattaccaaacacatttattttggttctatgagatt |
28865369 |
T |
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| Q |
212 |
atctttc--cataagttagtggtttggtcttaccaagtttaggtcacggaagataattagactcacattaattggatattttgtaacattcgacaaatta |
309 |
Q |
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| T |
28865370 |
atcttccatcataaattagtggtttggtctcaccaagtttaggtcacagaagatgattagactcagattaattggatatttcgtaacattcgacaaatta |
28865469 |
T |
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| Q |
310 |
aattgttactcatacttctcgcttttctttgataacct |
347 |
Q |
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| T |
28865470 |
aattgttactcatacttctcgcttttctttgataacct |
28865507 |
T |
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