View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_28 (Length: 362)
Name: NF15296_low_28
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 48890082 - 48890434
Alignment:
| Q |
1 |
taacattattgcttcaattatcatgatgtacacttgtttttgtcataacttactgaaaaatgccgttgctaaataaatcttcctttctctttcaggtggt |
100 |
Q |
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| T |
48890082 |
taacattattgcttcaattatcatgatgtacacttgtttttgtcataacttactgaaaaatgtcgttgctaaataaatcttcctttctctttcaggtggt |
48890181 |
T |
|
| Q |
101 |
gcttaataacatgttgtttcacactgcacgtgtaaactgtcttgcttggtcacctaatagcaaactggtagctactggttcacttgatacatgtgttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890182 |
gcttaataacatgttgtttcacactgcacgtgtaaactgtcttgcttggtcacctaatagcaaactggtagctactggttcacttgatacatgtgttatt |
48890281 |
T |
|
| Q |
201 |
gtatacgaaattggaaagccagcatcaagccgcagaaccataaaaggggctcatttaggtggagtgtatggcttgacttttattgagccagaaagagtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890282 |
gtatacgaaattggaaagccagcatcaagccgcagaaccataaaaggggctcatttaggtggagtgtatggcttgacttttattgagccagaaagagtgg |
48890381 |
T |
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| Q |
301 |
tcagttcgggagaagatagttgcgttcgtgtttgggatttaatttcagaataa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890382 |
tcagttcgggagaagatagttgcgttcgtgtttgggatttaatttcagaataa |
48890434 |
T |
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