View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_29 (Length: 355)
Name: NF15296_low_29
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 14936860 - 14936928
Alignment:
| Q |
280 |
tttctcatgacaatttgtttactaattcacttaaaaagttaacaaattgatttctattgaaggcctttg |
348 |
Q |
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| T |
14936860 |
tttcccatggcaatttctttactaattcacttaacaagttaacatatagatttatattgaaggcctttg |
14936928 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 34986083 - 34986151
Alignment:
| Q |
280 |
tttctcatgacaatttgtttactaattcacttaaaaagttaacaaattgatttctattgaaggcctttg |
348 |
Q |
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| T |
34986083 |
tttcccatggcaatttctttactaattcacttaacaagttaacatatagatttatattgaaggcctttg |
34986151 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 1060934 - 1060866
Alignment:
| Q |
280 |
tttctcatgacaatttgtttactaattcacttaaaaagttaacaaattgatttctattgaaggcctttg |
348 |
Q |
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| T |
1060934 |
tttcccatggcaatttctttactaattcacttaacaagttaacatatagatttatattgaaggcctttg |
1060866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 13677550 - 13677501
Alignment:
| Q |
114 |
ttaaatgaagggtgtaaagaattaaaaagggttctatgagattggaactt |
163 |
Q |
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| T |
13677550 |
ttaaatgaagggtgtaaagaattaaaaagagttatgtcagatttgaactt |
13677501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 34027776 - 34027839
Alignment:
| Q |
285 |
catgacaatttgtttactaattcacttaaaaagttaacaaattgatttctattgaaggcctttg |
348 |
Q |
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| T |
34027776 |
catggcaatttctttactaattcacttaacaagttaacatatagatttatattgaaggcctttg |
34027839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 1839164 - 1839192
Alignment:
| Q |
114 |
ttaaatgaagggtgtaaagaattaaaaag |
142 |
Q |
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| T |
1839164 |
ttaaatgaagggtgtaaagaattaaaaag |
1839192 |
T |
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