View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_low_30 (Length: 353)
Name: NF15296_low_30
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_30 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 40229835 - 40229483
Alignment:
| Q |
1 |
tccattaaaatcaggaatgattaggttacgtgtccatggaaatataacttgtctgcttaagataaacatgtattttaaatagcactaggtcgcttgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40229835 |
tccattaaaatcaggaatgattagtttacgtgtccatggaaatataacttgtctgcttaagataaacatgtattttaaatagcactaggtcgcttgttga |
40229736 |
T |
|
| Q |
101 |
ttcgggtgcatattatgtttaaatatataagtgctcatatagattgcttcnnnnnnntaattgcttatatagacttaaatggaaattttaattgatggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40229735 |
ttcgggtgcatattatgtttaaatatataagtgctcatatagattgcttcaaaaaaataattgcttatatagacttaaatggaaattttaattgatggct |
40229636 |
T |
|
| Q |
201 |
ccaaacttaaagtcatacccgttttagaatgagaactaaataatatacaaatcatctaattatacactcgggcaaagatacacccaaaccctaaacatat |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40229635 |
ccaaacttaaggtcatacccgttttagaatgagaactaaataatatacaaatcatctaattatacactcgggcaaagatacacccaaaccctaaacatat |
40229536 |
T |
|
| Q |
301 |
tgctattttcaatcaacactccgttagtcttcatgcgtctttatatacaatta |
353 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40229535 |
tgctattttcaatcaacacaccgttagtcttcatgcgtctttatatacaatta |
40229483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University