View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_low_31 (Length: 349)
Name: NF15296_low_31
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 29259079 - 29258743
Alignment:
| Q |
9 |
gagatgaatccagtctgaagatagcaacattgggatgagtttaatatcttttggcctcttgaaaagttctcaagacattgttttgattccccaacaagtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29259079 |
gagatgaatccagtctgaagatagcaacattgggatgagtttaatatcttttggcctcttgaaaagttctcaagacattgttttgattccccaacaagtt |
29258980 |
T |
|
| Q |
109 |
tccttaagggatcaacatgtttgcaagagtactagttttatcgattaggacggaccttc----ttagacttaggcttcactagtgtcccaattgatttgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29258979 |
tccttaagggatcaacatgtttgcaagagtactagttttatcgattaggacagaccttcttaattagacttaggcttcactagtgtcccaattgatttgt |
29258880 |
T |
|
| Q |
205 |
gtaatttgaatcagaaaatgatagaagattattggagcatagtgtctctaatgtttaaggacaatagttgtaa-------ttccggctgttatttcttaa |
297 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| | |||| ||| |||||||||||||||| |
|
|
| T |
29258879 |
gtaatttgaatcagaaaatgatag-agattattggagcatagtgtctctgatgttaaaggacaataatggtaattctgatttctggctgttatttcttaa |
29258781 |
T |
|
| Q |
298 |
ctgttcggcagaagtttggattattgtacaaaaaattg |
335 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
29258780 |
ctgttcagcagaagtttggattattggacaaaaaattg |
29258743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 29266979 - 29266887
Alignment:
| Q |
62 |
gcctcttgaaaagttctcaagacattgttttgattccccaacaagtttccttaagggatca-acatgtttgcaagagtactagttttatcgat |
153 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||| ||||||| || || ||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
29266979 |
gcctcttgaaaagttttgaagacatggttttgattccccaataagtttcattgagtgataatacatgtttgcaagagtactagtgttatcgat |
29266887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 2376915 - 2376734
Alignment:
| Q |
62 |
gcctcttgaaaagttctcaagacattgttttgattccccaacaagtttccttaagggatcaacatgtttgcaagagtactagttttatcga--ttaggac |
159 |
Q |
| |
|
|||||||||| || | | ||||||| |||||||||||| |||||||| |||| || ||||||||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
2376915 |
gcctcttgaacagctttaaagacatggttttgattcccaaacaagttaccttgagtgatcaacatgtttgcaagagtactagtgttatcgattttcggac |
2376816 |
T |
|
| Q |
160 |
ggaccttcttagacttaggcttcactagtgtcccaattgatttgtgtaatttgaatcagaaaatgatagaagattattggagca |
243 |
Q |
| |
|
||| ||| |||||||||||||| || ||||||| |||||||||||||| |||||| |||||| ||||||||||| ||||| |
|
|
| T |
2376815 |
acaccatctcagacttaggcttcaata--gtcccaactgatttgtgtaattcaaatcagcaaatgaaagaagattattagagca |
2376734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 2376703 - 2376663
Alignment:
| Q |
262 |
aggacaatagttgtaattccggctgttatttcttaactgtt |
302 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
2376703 |
aggactattgttgtaattccagctgttatttcttaactgtt |
2376663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University