View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_33 (Length: 342)
Name: NF15296_low_33
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 595361 - 595030
Alignment:
| Q |
1 |
tcactcatttacattgtcatctcaactatcccttaagctattcactcatttacataccgagctagcttcctatcatatctcttaatttatatgcaccaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595361 |
tcactcatttacattgtcatctcaactatcccttaagctattcactcatttacataccgagctagcttcctatcatatctcttaatttatatgcaccaga |
595262 |
T |
|
| Q |
101 |
gagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactgcaag |
200 |
Q |
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| T |
595261 |
gagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactgcaat |
595162 |
T |
|
| Q |
201 |
ggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595161 |
ggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaat |
595062 |
T |
|
| Q |
301 |
ccttaaagaacaataagaaaaatattattcat |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
595061 |
ccttaaagaacaataagaaaaatattattcat |
595030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 28168753 - 28168852
Alignment:
| Q |
223 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
322 |
Q |
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| T |
28168753 |
atgaactttggaaaatgttcttgcttcagtctcatttccaaaaacatagtccatatacctgaatcccagaatgcaaatccttaaagatcaataagaaaaa |
28168852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 22476977 - 22476878
Alignment:
| Q |
223 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
322 |
Q |
| |
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||||||||| |||||| | | ||||| | ||||||||| || |||||| |||||||| ||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
22476977 |
atgaactttcgaaaatgtccgtgcttcagtctcatttccaaatacatagtccatatacctgaatcccagaatgcaaacccttaaagatcaataagaaaaa |
22476878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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