View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_low_34 (Length: 340)

Name: NF15296_low_34
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_low_34
NF15296_low_34
[»] chr8 (3 HSPs)
chr8 (43-280)||(12073145-12073382)
chr8 (16-82)||(4763987-4764053)
chr8 (175-218)||(4763495-4763538)
[»] chr4 (1 HSPs)
chr4 (23-80)||(53315421-53315478)
[»] chr6 (1 HSPs)
chr6 (244-280)||(26891597-26891633)
[»] chr1 (1 HSPs)
chr1 (20-76)||(33723297-33723353)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 43 - 280
Target Start/End: Complemental strand, 12073382 - 12073145
Alignment:
Q  43 gaacttatccaatactataagcacctatgagactatttaaagaacaacatatgcaaggatctgagtaaaatccaatcttctagctatgtcagaatttaac 142  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||| ||| || ||| ||||||||| ||||||||||| |||||| |||||||||||||    
T  12073382 gaacttatccactactataaacacctatgatactatttaaagaacatcatttgaaagaatctgagtagaatccaatcttttagctaagtcagaatttaac 12073283  T
Q  143 tttggtgacagaattttataatgtttttcttcttctgttcagcttcatacttaattttcttcttaaaaattttaactttggtgat-gaattttataatgt 241  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||     
T  12073282 tttggtgacagaattttataatgttttgcttcttctgttcagcttcatacttaattttcttcttaaaaaatttaactttggtgatagaatttcataatg- 12073184  T
Q  242 tttttcggcacaaaaatgaattgaagggaatgttcctct 280  Q
    |||||| || |||| ||||||||||||||||||||||||    
T  12073183 tttttcagctcaaacatgaattgaagggaatgttcctct 12073145  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 4764053 - 4763987
Alignment:
Q  16 tagggacctgtttcgattgacttatttgaacttatccaatactataagcacctatgagactatttaa 82  Q
    ||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  4764053 tagggacctgtttggattgacttatttgaacttatccactagcataagcacctatgagactatttaa 4763987  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 4763538 - 4763495
Alignment:
Q  175 ttctgttcagcttcatacttaattttcttcttaaaaattttaac 218  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||    
T  4763538 ttctgttcggcttcatacttaattttcttcttcaaaagtttaac 4763495  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 53315478 - 53315421
Alignment:
Q  23 ctgtttcgattgacttatttgaacttatccaatactataagcacctatgagactattt 80  Q
    |||||| ||||||||||||||| |||||||| |  ||||||||| ||| |||||||||    
T  53315478 ctgtttggattgacttatttgagcttatccactggtataagcacatataagactattt 53315421  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 26891633 - 26891597
Alignment:
Q  244 tttcggcacaaaaatgaattgaagggaatgttcctct 280  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  26891633 tttcagcacaaacatgaattgaagggaatgttcctct 26891597  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 33723297 - 33723353
Alignment:
Q  20 gacctgtttcgattgacttatttgaacttatccaatactataagcacctatgagact 76  Q
    ||||||||| |||||||||||||||||||||| | ||| |||| ||| | |||||||    
T  33723297 gacctgtttggattgacttatttgaacttatctactaccataaacacttgtgagact 33723353  T

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