View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_37 (Length: 321)
Name: NF15296_low_37
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 32272393 - 32272678
Alignment:
| Q |
18 |
aggtaaataaaaggtgtagaatttatattatattaaactaataatcgaaggtgtttataacaaaaaagaaaacaacgaacaaacacaaggtattgagctc |
117 |
Q |
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| T |
32272393 |
aggtaaataaaaggtgtagaatttatattatattaaactaataatcgaaggtgtttataacaaaaaagaaaacaacgaacaaacacaaggtattgagctc |
32272492 |
T |
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| Q |
118 |
cttaagctgacaatgcgtaacaaaaagtaattacaacaaggtatgccgactaccttgtttaccgattccacccatgctcaaagttgcagcattgcacacc |
217 |
Q |
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| T |
32272493 |
cttaagctgacaatgcgtaacaaaaagtaattacaacaaggtatgccgactaccttgtttaccgattccacccatgctcaaagtggcagcattgcacacc |
32272592 |
T |
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| Q |
218 |
ttgccttcaaggacggtgttgggaggctcctccatacttgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgt |
303 |
Q |
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| T |
32272593 |
ttgccttcaaggacggtgttgagaggctcctccatacttgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgt |
32272678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 24551538 - 24551583
Alignment:
| Q |
258 |
agtcctcatctcttcaagctcttttcgactctgagtcctcgcttgt |
303 |
Q |
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| T |
24551538 |
agtcctcatctcttgaagttctttttgactctgagtcctcgcttgt |
24551583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 32809089 - 32809140
Alignment:
| Q |
173 |
tgtttaccgattccacccatgctcaaagttgcag-cattgcacaccttgcct |
223 |
Q |
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| T |
32809089 |
tgtttaccgattccacccatgcccaaggttgcagcctttgcacaccttgcct |
32809140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 13900226 - 13900179
Alignment:
| Q |
256 |
tgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgt |
303 |
Q |
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| T |
13900226 |
tgagtcctcatctcttgaagttctttttgactctgagtcctcgcttgt |
13900179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 19139108 - 19139061
Alignment:
| Q |
256 |
tgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgt |
303 |
Q |
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| T |
19139108 |
tgagtcctcatctcttgaagttctttttgactctgagtcctcgcttgt |
19139061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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