View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_38 (Length: 309)
Name: NF15296_low_38
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 1192161 - 1191872
Alignment:
| Q |
17 |
aaagtgaacaatggtatttgagtgagatgaaaggcttgttgcttgctgattgatatcataggtacacaacaatgagatcgagctgaaattttataccgaa |
116 |
Q |
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| T |
1192161 |
aaagtgaacaatggtatttgagtgagatgaaaggcttgttgcttgctaattgatatcataggtacacaacaatgagatcgagctgaaattttatactgaa |
1192062 |
T |
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| Q |
117 |
agaaatagagagaagtgtaatagcttgatatagaaccggcacttatgatccatggtgtgttctggtgtacaacacatgtcaatgttcgacaccgacacga |
216 |
Q |
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| T |
1192061 |
agaaatagagagaagtgtaatagcttgatatagaaccggcacttatgatccacggtgtgttctggtgtacaacacatgttaatgtccgacaccgacacga |
1191962 |
T |
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| Q |
217 |
tgtgacaccgacataagtgattatatttgtttacgtaattttctca-----agatcggtgtcaacgtgtaaatgtttgtgtgtctgtgct |
301 |
Q |
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| T |
1191961 |
tgtgacaccgacataagtgattatatttgtttatgtaattttctcaagattagatcggtgtcaacgtgtaaatgtttgtgtgtctgtgct |
1191872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 301
Target Start/End: Complemental strand, 1178710 - 1178530
Alignment:
| Q |
125 |
agagaagtgtaatagcttgatatagaaccggcacttatgatccatggtgtgttctggtgtacaacacatgtcaatgttcgacaccgacacgatgtgacac |
224 |
Q |
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| T |
1178710 |
agagaagcgtaatagcttgttataaaaccgccccttatgatc-atggtgtgttccggtgtacgacacatgtcaatgtctggtcctgacactatacggcat |
1178612 |
T |
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| Q |
225 |
cgacataagtgattatatttgtttacgtaattttctcaag-----atcggtgtcaacgtgtaaatgtttgtgtgtctgtgct |
301 |
Q |
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| T |
1178611 |
tgacacatgtacttatatttgtttatgtaattttctcaagattgtatcagtgtcaacgtgtaagtgtttgtatgtttgtgct |
1178530 |
T |
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