View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_41 (Length: 294)
Name: NF15296_low_41
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_41 |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 34324924 - 34325217
Alignment:
| Q |
1 |
ttagagatgactataagattattaggtgtatagattattttccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34324924 |
ttagagatgactataagattattaggtgtatagattattttccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaa |
34325023 |
T |
|
| Q |
101 |
aatattttacaatactgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgccttcggatacaaacaaccgtatatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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| T |
34325024 |
aatattttacaatactgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgccttcggatataaacaaacatatatta |
34325123 |
T |
|
| Q |
201 |
tacacgaatgatggaatttgtcattggttgagtaatgatgatcaacttttgttggtatcgcttgacctcagcagctatgtgtattttacaacaa |
294 |
Q |
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| T |
34325124 |
tacacgaatgatggaatttgtcattggttgagtaatgatgatcaacttttgttggtatcgtttgacctcagcagctatgtgtattttacaacaa |
34325217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 29352934 - 29352756
Alignment:
| Q |
1 |
ttagagatgactataagattattaggtgtatagattattttccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatc---gga |
97 |
Q |
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|||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||| ||| |
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| T |
29352934 |
ttagagatgactataagattattaggcgtctagcttattttccattaagtgaagaagatcttctttatctcaatctactagaagatgcgcaatcggagga |
29352835 |
T |
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| Q |
98 |
aaaaatattttacaatactgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcct |
176 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
29352834 |
aaaaatattttatgatgatgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcgatctgcct |
29352756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 29352717 - 29352616
Alignment:
| Q |
194 |
tatattatacacgaatgatggaatttgtcattggttgagtaa---tgatgatcaacttttgttggtatcgcttgacctcagcagctatgtgtattttaca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
29352717 |
tatattatacacgaatgatggaatttgtcattggttgagtaaaaataatgatcaactttggttggtatcgtttgaccttagcagctatgtgtattttaca |
29352618 |
T |
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| Q |
291 |
ac |
292 |
Q |
| |
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|| |
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| T |
29352617 |
ac |
29352616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 44938177 - 44938120
Alignment:
| Q |
119 |
atgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcct |
176 |
Q |
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||||||||||||||| ||||| ||||| ||||| | ||||||||||||||||||||| |
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| T |
44938177 |
atgggagatttatagcttaaggtgtaattcttggaagaaacttgatgtcaatatgcct |
44938120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 4027500 - 4027793
Alignment:
| Q |
1 |
ttagagatgactataagattattaggtgtatagattattttccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027500 |
ttagagatgactataagattattaggtgtctagattattttccattaagtgaaagagatcttttttatctcaatctaccagaagaagcgcaatcggaaaa |
4027599 |
T |
|
| Q |
101 |
aatattttacaatactgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgccttcggatacaaacaaccgtatatta |
200 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| |
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| T |
4027600 |
aatattttatgataatgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgctttcggatacaaaccaacatatatta |
4027699 |
T |
|
| Q |
201 |
tacacgaatgatggaatttgtcattggttgagtaatgatgatcaacttttgttggtatcgcttgacctcagcagctatgtgtattttacaacaa |
294 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
4027700 |
tacacgaatgatggaatttgtcattggttaaataatgatgatcgactttggttagtatcgtttgacctcagcagctatgtgtattttacaacaa |
4027793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 30249508 - 30249689
Alignment:
| Q |
119 |
atgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgccttcggatacaaacaaccg---tatattatacacgaatgatgga |
215 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || || | | ||||| |||||||||||||| |
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| T |
30249508 |
atgggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgccttcgcggtcatactacagagatctattaaacacgaatgatgga |
30249607 |
T |
|
| Q |
216 |
atttgtcattggttgagt---aatgatgatcaacttttgttggtatcgcttgacctcagcagctatgtgtattttacaacaa |
294 |
Q |
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|| |||||||||||| | | |||||||||||||| |||||||| ||||||||||||||||||| | ||| ||||||| |
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| T |
30249608 |
atatgtcattggttgtctgaaactgatgatcaactttgcttggtatcatttgacctcagcagctatgtatttttaacaacaa |
30249689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 25627898 - 25627957
Alignment:
| Q |
116 |
tgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcc |
175 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||||| |
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| T |
25627898 |
tgtatgggagatttatagtctaagatgtaacacttggaaagaacttcatgtcgatatgcc |
25627957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 30651273 - 30651329
Alignment:
| Q |
116 |
tgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
30651273 |
tgtatgggagatttatagtttaagatgtaacacttgggaataacttcatgtcgatat |
30651329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 31777618 - 31777675
Alignment:
| Q |
115 |
ctgtatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatat |
172 |
Q |
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|||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |||| |
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| T |
31777618 |
ctgtatgggagatttatagtctacgatgtaacacttgggaagaacttcatgtcgatat |
31777675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31777501 - 31777544
Alignment:
| Q |
1 |
ttagagatgactataagattattaggtgtatagattattttcca |
44 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
31777501 |
ttagagatgactataagattattaggtgtatacatttttttcca |
31777544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30651155 - 30651196
Alignment:
| Q |
1 |
ttagagatgactataagattattaggtgtatagattattttc |
42 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
30651155 |
ttagagatgactataagattattaggtgtatacatttttttc |
30651196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 20426310 - 20426368
Alignment:
| Q |
118 |
tatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcct |
176 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
20426310 |
tatgggagatttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcct |
20426368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 4877551 - 4877607
Alignment:
| Q |
120 |
tgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcct |
176 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||| | ||||||||| ||||||||||| |
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|
| T |
4877551 |
tgggagatttatagtctaagaagtaactcttggaagaaacttgatttcaatatgcct |
4877607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 13477586 - 13477628
Alignment:
| Q |
115 |
ctgtatgggagatttatagtttaagatgtaacacttgggaaaa |
157 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
13477586 |
ctgtttgggagatttatagtctaagatgtaacacttgagaaaa |
13477628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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