View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_low_44 (Length: 273)
Name: NF15296_low_44
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 827108 - 826862
Alignment:
| Q |
18 |
agtcagtgcctttttcatccaagaattgttttctattctctactaaaccacatgttatgattattttgannnnnnnn-cagggtattgtcaataatgaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
827108 |
agtcagtgcctttttcatccaagaattgttgtctattctctactaaaccacatgttatgattattttgatttttttttcagggtattgtcaataatgaga |
827009 |
T |
|
| Q |
117 |
ctcttggttatttcattgggagagtgtatctcttcttgatgcgtctcggtatagacaaagaccgcttgagatttaggcagcatcttgccaatgagatggc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827008 |
ctcttggttatttcattgggagagtgtatctcttcttgatgcgtctcggtatagacaaagaccgcttgagatttaggcagcatcttgccaatgagatggc |
826909 |
T |
|
| Q |
217 |
ccattatgccgctgactgttgggatgctgagattgagtgctcctatg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
826908 |
ccattatgccgctgactgttgggatgctgagattgagtgctcctatg |
826862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 833613 - 833446
Alignment:
| Q |
96 |
agggtattgtcaataatgagactcttggttatttcattgggagagtgtatctcttcttgatgcgtctcggtatagacaaagaccgcttgagatttaggca |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
833613 |
agggtattgttaataatgagactcttggttatttcattgggagagtatatctcttcttgacgcgtctcagtatagacaaagaccgcttgagatttaggca |
833514 |
T |
|
| Q |
196 |
gcatcttgccaatgagatggcccattatgccgctgactgttgggatgctgagattgagtgctcctatg |
263 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
833513 |
gcatcttgccaatgagatggctcattatgccgctgactgttgggatgctgagattgagtgttcctatg |
833446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 53 - 263
Target Start/End: Complemental strand, 939881 - 939671
Alignment:
| Q |
53 |
ttctctactaaaccacatgttatgattattttgannnnnnnncagggtattgtcaataatgagactcttggttatttcattgggagagtgtatctcttct |
152 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
939881 |
ttctttactaaaccgcatgttatgattgttttgatttttgatcagggtattgtcaacaatgagactcttggttatttcattgggagagtatatctcttct |
939782 |
T |
|
| Q |
153 |
tgatgcgtctcggtatagacaaagaccgcttgagatttaggcagcatcttgccaatgagatggcccattatgccgctgactgttgggatgctgagattga |
252 |
Q |
| |
|
||| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
939781 |
tgacgcgtctcggtatagacaaagaccgtttaagattcaggcagcatcttgccaatgagatggctcattatgctgctgactgttgggatgctgagattga |
939682 |
T |
|
| Q |
253 |
gtgctcctatg |
263 |
Q |
| |
|
||| ||||||| |
|
|
| T |
939681 |
gtgttcctatg |
939671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University