View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_47 (Length: 257)
Name: NF15296_low_47
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11115235 - 11114992
Alignment:
| Q |
1 |
aatgaaatgcataattgaataagagagtgaccttgtgcaccaaaatatgtagaattagtctttgcttggaattgaggattccatgtgtgtttgaaagtat |
100 |
Q |
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| T |
11115235 |
aatgaaatgcataattgaataagaaagtgaccttgtgcaccaaaatatgtagaattagtctttgcttggaattgaggattccatgtgtgtttgaaagtat |
11115136 |
T |
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| Q |
101 |
atgtaggcatcattataaaaatgaaaattaaacccagaaacagtaacaccatcaataaccttattgtagattgaattaatccatattttatttgagtagg |
200 |
Q |
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| T |
11115135 |
atgtaggcatcattataaaaatgaaaattaaacccagaaacagtaacaccatcaataaccttattgtagattgaattaatccatattttatttgagtagg |
11115036 |
T |
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| Q |
201 |
tgaccttttcactttatcttgagccattttttggtgttgtttct |
244 |
Q |
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| T |
11115035 |
tgaccttttcactttatcttgagccattttttgttgttgtttct |
11114992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 11103269 - 11103186
Alignment:
| Q |
91 |
ttgaaagtatatgtaggcatcattataaaaatgaaaattaaacccagaaacagtaacaccatcaataaccttattgtagattga |
174 |
Q |
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|||||||||| ||||||||||||||| |||| | ||| |||||||||| | || ||||| |||||||||||| |||||||| |
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| T |
11103269 |
ttgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaataatagcaccactaataaccttattatagattga |
11103186 |
T |
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