View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_49 (Length: 256)
Name: NF15296_low_49
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 36766523 - 36766299
Alignment:
| Q |
15 |
catatcagacccctaaattcaaaaagcagagcctcatagaccatatcagccgaaaaaacaaatgacagtacacaattacaattcaaaccacgccactaga |
114 |
Q |
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| T |
36766523 |
catatcggacccctaaattcaaaaagcagagtctcatagaccatatcagccgaaaaa-caaatgaccgtacacaattacaattcaaaccatgccactaga |
36766425 |
T |
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| Q |
115 |
cacttaaaacccccaaacctatgtagaaaatcgatcatagcacagccaccgaattgagatctctccagtaaaatacattacctcccccataaacttattc |
214 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36766424 |
cacttaaaacccccgaacctatgtagaaaatcgatcatagcacagccaccgaattgagatctcgccagtaaaatacattacctcccccataaacttattg |
36766325 |
T |
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| Q |
215 |
tatcccatcaccattcataaagtaaa |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36766324 |
tatcccatcaccattcataaagtaaa |
36766299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 36755586 - 36755432
Alignment:
| Q |
55 |
ccatatcagccgaaaaaacaaatgacagtacaca--attacaattcaaaccacgccactagacacttaaaacccccaaaccta-tgtagaaaatcgatca |
151 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||| |||||| | ||||||||| |||| | |||||||||||||||| |
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| T |
36755586 |
ccatatcagccgaaaaa-caaatgacagtacacagaattacaatgcaaaccacaccagtagacagtaaaaacccccgaaccgaatgtagaaaatcgatca |
36755488 |
T |
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| Q |
152 |
tagcacagccaccgaattgagatctctccagtaaaatacattacctcccccataaa |
207 |
Q |
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| T |
36755487 |
tagcacagccaccaaaatgagatctcgccagtaaaatacattacctcccgcataaa |
36755432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 36748087 - 36747962
Alignment:
| Q |
83 |
tacacaattacaattcaaaccacgccactagacacttaaaacccccaaaccta-tgtagaaaatcgatcatagcacagccaccgaattgagatctctcca |
181 |
Q |
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|||| ||||||||| |||||||| ||| |||||||| |||| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
36748087 |
tacataattacaatgcaaaccacaccagtagacactaaaaaaccccgaaccgaatgtagaaaatcgatcatatcacagccaccgaattgagatctcgcat |
36747988 |
T |
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| Q |
182 |
gtaaaatacattacctcccccataaa |
207 |
Q |
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||||||||||||||||||| |||||| |
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| T |
36747987 |
gtaaaatacattacctcccacataaa |
36747962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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