View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_5 (Length: 608)
Name: NF15296_low_5
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Complemental strand, 52071544 - 52070968
Alignment:
| Q |
17 |
aatgaaatcaagaattattggaacacgaatttaggaaaaaaggttaaagatctccaacaacaaaacaccaacaactctactccaaaaaatgcaaagatcg |
116 |
Q |
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| T |
52071544 |
aatgaaatcaagaattattggaacacgaatttaggaaaaaaggttaaagatctccaacaacaaaacaccaacaactctactccaaaaaatgcaaagatcg |
52071445 |
T |
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| Q |
117 |
cacataaacagaacaatcctaaaccaatggtgccaaactcacatgttgttcgtacaaaagctaccaagtgctctaaggtattattcatgaattcactccc |
216 |
Q |
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| T |
52071444 |
cacataaacagaacaatcctaaaccaatggtgccaaactcacatgttgttcgtacaaaagctaccaagtgctctaaggtattattcatgaattcactccc |
52071345 |
T |
|
| Q |
217 |
taactcatcaacaatgcagaatttgcagaacaaagttgagacagagacaaaaacaaagccatcaatgcatgttgatagcagggatagtgattcaatgagt |
316 |
Q |
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| T |
52071344 |
taactcatcaacaatgcagaatttgcagaacaaagttgagacagagacaaaaacaaagccatcaatgcatgttgatagcagggatagtgattcaatgagt |
52071245 |
T |
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| Q |
317 |
aacaaccaaatggagaatggtaatgaatttttgtcattttcagatgcgaaaaaaggactatccacagatttgctagttgattttaacatgggagatcatg |
416 |
Q |
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| T |
52071244 |
aacaaccaaatggagaatggtaatgaatttttgtcattttcagatgcgaaaaaaggactatccacagatttgctagttgattttaacatgggagatcatg |
52071145 |
T |
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| Q |
417 |
atattagcttatccgaacttttgaactcggatttttcaactgcatgcaattttgattacaatgagttattgtcaccttgttctgaccagactcctatgtt |
516 |
Q |
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| T |
52071144 |
atattagcttatccgaacttttgaactcggatttttcaactgcatgcaattttgattacaatgagttattgtcaccttgttctgaccagactcctatgtt |
52071045 |
T |
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| Q |
517 |
ttcggatgagattctcaagaactggacagaatgtagctttgttgatgagaaaaatgtgactaacaaccttcattatt |
593 |
Q |
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| T |
52071044 |
ttcggatgagattctcaagaactggacagaatgtagttttgttgatgagaaaaatgtgactaacaaccttcattatt |
52070968 |
T |
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