View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_low_63 (Length: 227)

Name: NF15296_low_63
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_low_63
NF15296_low_63
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-107)||(56258-56345)
[»] chr4 (5 HSPs)
chr4 (30-107)||(56297544-56297621)
chr4 (25-102)||(52980488-52980565)
chr4 (45-102)||(39591838-39591895)
chr4 (25-53)||(6615952-6615980)
chr4 (33-69)||(35788299-35788335)
[»] chr3 (1 HSPs)
chr3 (25-102)||(5690378-5690455)
[»] chr7 (1 HSPs)
chr7 (36-107)||(4857860-4857932)
[»] chr1 (1 HSPs)
chr1 (42-96)||(33795257-33795311)


Alignment Details
Target: scaffold0025 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 56345 - 56258
Alignment:
Q  20 aatagcaacacatcaacaacagcagcaacaacaataccaaatcaaattcaaccatttttcttttctttcaatatcatgatcatgaatt 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  56345 aatagcaacacatcaacaacagcagcaacaacattaccaaatcaaattcaaccatttttcctttctttcattatcatcatcatgaatt 56258  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 56297621 - 56297544
Alignment:
Q  30 catcaacaacagcagcaacaacaataccaaatcaaattcaaccatttttcttttctttcaatatcatgatcatgaatt 107  Q
    ||||||||| ||||||||||||||||||||||||||||||| | |||||  ||||||||| || ||| ||||||||||    
T  56297621 catcaacaatagcagcaacaacaataccaaatcaaattcaatcctttttgctttctttcattaccatcatcatgaatt 56297544  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 52980488 - 52980565
Alignment:
Q  25 caacacatcaacaacagcagcaacaacaataccaaatcaaattcaaccatttttcttttctttcaatatcatgatcat 102  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||||  ||||||| | |||||| |||||    
T  52980488 caacacatcaacaacaacaacaacaacaatatcaaatcaaattcaaccctttttgctttcttttattatcattatcat 52980565  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 39591895 - 39591838
Alignment:
Q  45 caacaacaataccaaatcaaattcaaccatttttcttttctttcaatatcatgatcat 102  Q
    ||||||||||| |||||||||||||||| |||||  ||||||||| |||||| |||||    
T  39591895 caacaacaatatcaaatcaaattcaaccctttttgctttctttcattatcattatcat 39591838  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 6615980 - 6615952
Alignment:
Q  25 caacacatcaacaacagcagcaacaacaa 53  Q
    |||||||||||||||||||||||||||||    
T  6615980 caacacatcaacaacagcagcaacaacaa 6615952  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 35788299 - 35788335
Alignment:
Q  33 caacaacagcagcaacaacaataccaaatcaaattca 69  Q
    |||||||| |||||||||||||||||||| |||||||    
T  35788299 caacaacaacagcaacaacaataccaaatgaaattca 35788335  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5690378 - 5690455
Alignment:
Q  25 caacacatcaacaacagcagcaacaacaataccaaatcaaattcaaccatttttcttttctttcaatatcatgatcat 102  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||  ||||||||  |||||| |||||    
T  5690378 caacaaatcaacagcagcagcaacaacaatatcaaatcaaattcaaccctttttgctttctttctttatcataatcat 5690455  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 4857932 - 4857860
Alignment:
Q  36 caacagcagcaacaacaataccaaatcaaattcaaccat-ttttcttttctttcaatatcatgatcatgaatt 107  Q
    ||||| ||||| ||||||||||||| ||||||||||||| ||||  ||||||||| |||||| ||||||||||    
T  4857932 caacaacagcagcaacaataccaaaccaaattcaaccattttttactttctttcattatcatcatcatgaatt 4857860  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 33795311 - 33795257
Alignment:
Q  42 cagcaacaacaataccaaatcaaattcaaccatttttcttttctttcaatatcat 96  Q
    ||||| |||||||||||||| |||||||||| |||||  ||||||||||||||||    
T  33795311 cagcatcaacaataccaaattaaattcaaccctttttgctttctttcaatatcat 33795257  T

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