View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_68 (Length: 214)
Name: NF15296_low_68
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 42424029 - 42423855
Alignment:
| Q |
21 |
acttcagcctcttccttgggcgtaaaatcattctcaacaccgaaatactctctcacataaccaacgttcttgttcttaatccgatcagcaacaaccccag |
120 |
Q |
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| T |
42424029 |
acttcagcctcttccttgggcgtaaaatcattctcaacaccgaaatactctctcacataaccaacgttcttgttcttaatccgatcagcaacaaccccag |
42423930 |
T |
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| Q |
121 |
tcagaagctcaaaaagactctccatattcaagtaatgcactgcaagaagaaactctttcacctcatcgttattca |
195 |
Q |
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| T |
42423929 |
tcagaagctcaaaaagactctccatattcaagtaatgcactgcaagaagaaactccttcacctcatcgttattca |
42423855 |
T |
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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 6062634 - 6062797
Alignment:
| Q |
27 |
gcctcttccttgggcgtaaaatcattctcaacaccgaaatactctctcacataaccaacgttcttgttcttaatccgatcagcaacaaccccagtcagaa |
126 |
Q |
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|||||||||| | ||||| ||||||||| | ||| ||||| | ||||||||| |||| ||||| ||||| |||||||| |||||| || ||||| || |
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| T |
6062634 |
gcctcttcctccgccgtaagatcattctcgataccaaaatagtttctcacatacacaacattcttattcttgatccgatccgcaacagcctgagtcaaaa |
6062733 |
T |
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| Q |
127 |
gctcaaaaagactctccatattcaagtaatgcactgcaagaagaaactctttcacctcatcgtt |
190 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| |
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| T |
6062734 |
cctcaaaaagactctccatattcaagtaatgaacagcaagaagaaactccttcaactcatcgtt |
6062797 |
T |
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