View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_72 (Length: 204)
Name: NF15296_low_72
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 8521304 - 8521483
Alignment:
| Q |
1 |
ttcaacattacattggctaaaaagttgtggttatacatggagattgacttcaaagtcattgttatcgtattttaggagcattgattggtttgttattttt |
100 |
Q |
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| T |
8521304 |
ttcaacgttacattggctaaaaagctgtggttgtacatgtagattgactttaaagtcattgttatcgtattataggagcatcgattggtttgttattttt |
8521403 |
T |
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| Q |
101 |
cctagctaagtggtttgatatttcatctcacaaattcttccacatcatatctttacttattttatacggcttataaattt |
180 |
Q |
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| T |
8521404 |
tctagctgagtggtttgatatttcatctcacaaattcttccacatcatatctttacttattttatgaggcttataaattt |
8521483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 8511716 - 8511882
Alignment:
| Q |
1 |
ttcaacattacattggctaaaaagttgtggttatacatggagattgacttcaaagtcattgttatcgtattttaggagcattgattggtttgttattttt |
100 |
Q |
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| T |
8511716 |
ttcaacattacattggctaaaaagttgtggtcgtacatgtacattgacttgaaagtcattgttatcgtattataggagcattgattgatttcctattttt |
8511815 |
T |
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| Q |
101 |
cctagctaagtggtttgatatttcatctcacaaattcttccacatcatatctttacttattttatacg |
168 |
Q |
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| T |
8511816 |
actacctgattggttttatttttcatctcacaaatt-tttcacatcatatctatacttattttatacg |
8511882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 12251042 - 12251163
Alignment:
| Q |
4 |
aacattacattggctaaaaagttgtggttatacatggagattgacttcaaagtcattgttatcgtattttaggagcattgattggtttgttatttttcct |
103 |
Q |
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| T |
12251042 |
aacatgacattggctaaaaagttgtggttgtacatgtacaatgactttaaaatcattgttatcgtattata-gagcattgattggtttgat-tttttcct |
12251139 |
T |
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| Q |
104 |
agctaagtggtttgatatttcatc |
127 |
Q |
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| T |
12251140 |
agctaattagtttgatttttcatc |
12251163 |
T |
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