View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_low_8 (Length: 552)
Name: NF15296_low_8
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 40111655 - 40112173
Alignment:
| Q |
16 |
atacacatactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111655 |
atacacatactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaa |
40111754 |
T |
|
| Q |
116 |
tttttcatatggtattgagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattgg |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111755 |
tttttcatatggtatttagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattgt |
40111854 |
T |
|
| Q |
216 |
tccaagtggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcttatggagaaaaaatctgttgggcggggagaatccaccttatgtgcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111855 |
tccaagtggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcgtatggagaaaaaatctgttgggcggggagaatccaccttatgtgcc |
40111954 |
T |
|
| Q |
316 |
ctatatgttttcgaacgagattagttattgttaaacggtggtggaaacttctaaccaatataatggtnnnnnnntaaccatgattaaaaacaaatgaata |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40111955 |
ctatatgttttcgacggagattagttattgttaaacggcggtggaaacttctaaccaatataatggtaaaaaaataaccatgattaaaaacaaatgaata |
40112054 |
T |
|
| Q |
416 |
taaatagcaacatagcttgcaccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112055 |
taaatagcaacatagcttgcaccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataa |
40112154 |
T |
|
| Q |
516 |
tcaaagcattcttggaacc |
534 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40112155 |
tcaaagcattcttggaacc |
40112173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 456 - 531
Target Start/End: Original strand, 40149794 - 40149869
Alignment:
| Q |
456 |
cttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttgga |
531 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40149794 |
cttaccaattgggcttcaaatttgcagccacgtataaccaataaccagatgttccgataatcaaagcattcttgga |
40149869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 531
Target Start/End: Original strand, 40156168 - 40156242
Alignment:
| Q |
457 |
ttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttgga |
531 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||| ||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
40156168 |
ttaccaattgggcttcaaatttgcagccaggtataaccaataacccgaagttccaacaatcaaagcattcttgga |
40156242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 43460320 - 43460271
Alignment:
| Q |
202 |
caacaatgaattggtccaagtggtaaggaactcaaatcccttaagcatgt |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
43460320 |
caacaatggattggtccaagtggtaagggacttgaaccccttaagcatgt |
43460271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 32729359 - 32729307
Alignment:
| Q |
330 |
acgagattagttattgttaaacggtggtggaaacttctaaccaatataatggt |
382 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| |||||||| ||||| |
|
|
| T |
32729359 |
acgagattagtcattgttaagcggttgtggaaacttcataccaatatcatggt |
32729307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University