View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_high_18 (Length: 227)
Name: NF15297_high_18
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_high_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 16098497 - 16098270
Alignment:
| Q |
6 |
agaaaggcttcactaattttggaagttagaagaccaagatttgataagaaattcaatgatggattcttcaaagctggtatccacttctacaaattacnnn |
105 |
Q |
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| T |
16098497 |
agaaaggcttcactaattttggaagttataaaaccaagatttgataagaaattcaatgatggattcttcaaagctggtatccacttctacaaattacaaa |
16098398 |
T |
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| Q |
106 |
nnnnnnnnnnnnnttcaacaatagtcataaaactcac------caacattttttcataataagcttactataaaacacaatgtaaaaaataacaatctat |
199 |
Q |
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| T |
16098397 |
aataaaaacaaaagtcaacaatagtcataaaactcacctatgacaacattttgtcataataagcttactataaaacacaaagtaaaaaataacaatctat |
16098298 |
T |
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| Q |
200 |
gtaagttttgatagaaatgttattttct |
227 |
Q |
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| T |
16098297 |
gtaagttttgatagaaatgttattttct |
16098270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 16080834 - 16080800
Alignment:
| Q |
68 |
attcttcaaagctggtatccacttctacaaattac |
102 |
Q |
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| T |
16080834 |
attcttcaaagctggtatccactcctacaaattac |
16080800 |
T |
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