View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15297_low_1 (Length: 917)
Name: NF15297_low_1
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 673 - 907
Target Start/End: Complemental strand, 26642734 - 26642500
Alignment:
| Q |
673 |
gaaaagttgtaattaaattaattcccatgcctttatcat--gtcatactaagaaagaagttaattatatgagaatgaaatgtttgtgttcaggtaattgc |
770 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
26642734 |
gaaaagttgtaattaaattaatttctatgcctttatcatatgtcatacttataaagaagttaatcatatgagaaagaaatgt--gtgttcaggtaattgc |
26642637 |
T |
|
| Q |
771 |
tggaattgatgtcgcagtgagatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatc |
870 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642636 |
tggaattgatgtggcagtgcgatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatc |
26642537 |
T |
|
| Q |
871 |
ccgcctaatgtaagaatccttttatgatccagaatta |
907 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26642536 |
ccacctaatgtaagaatccttttatgatccagaatta |
26642500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 58 - 379
Target Start/End: Complemental strand, 26643078 - 26642770
Alignment:
| Q |
58 |
tgttttgtcttgctttgttggtagagtatgagaatttgtaggnnnnnnnatttatata-taattcagtggataggtaaggtgtgtaagtaactattttac |
156 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||| | | ||||||||| ||||||||||| |||||||| |
|
|
| T |
26643078 |
tgttttgttttgctttgttggtagagtatgagaatttgtaggatttat-atttatagactaatttaattgataggtaatgtgtgtaagtatttattttac |
26642980 |
T |
|
| Q |
157 |
attattacttatttttcattgtgactgttatgattttagtaaatgttgttacattgaaggttgagattcattactatggtagacttgcagcaaaacaagg |
256 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642979 |
attatta-------ttcatt---------atgattttagtaaatgtttttatattgaaggttgagattcattactatggtagacttgcagcaaaacaagg |
26642896 |
T |
|
| Q |
257 |
atggcgttttgattcaacctatgaccacaaagatgagaatggtgatcctaatccttttgtctttgtccttggctctggtaaggtaa--gcttaattataa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
26642895 |
atggcgttttgattcaacctatgaccacaaagatgagaatggtgatcctaatccttttgtctttgtccttggctctggtaaggtaaatgcttgattataa |
26642796 |
T |
|
| Q |
355 |
ccagcaaa-ttggattggcgtttgac |
379 |
Q |
| |
|
|||||||| |||||||||| |||||| |
|
|
| T |
26642795 |
ccagcaaatttggattggcttttgac |
26642770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University