View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_10 (Length: 367)
Name: NF15297_low_10
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_10 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 25797173 - 25797512
Alignment:
| Q |
16 |
catttggcataggcatttcttggaggttccgatggaaccatggcattagcagcagtttactgctgaacctgctctggtgctaccacattagttgtctgca |
115 |
Q |
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| T |
25797173 |
catttggcataggcatttcttggaggttccgacagaaccatggcattagcagcagtttactgctgaacctgctctggtgctaccacattagttgtctgca |
25797272 |
T |
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| Q |
116 |
cagaatttacttgcagccaagactgcataatggctctcgctagctgtacgctcaattctgtagtttcttgcacagcttcctattcctcatcttccaaatt |
215 |
Q |
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| T |
25797273 |
cagaatttacttgcagccaagactgcataatggctctcgctagctgtacgctcaattctgcagtttcttgcacaacttcctattcctcatcttccaaatg |
25797372 |
T |
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| Q |
216 |
ctccatgtgatagttgcaaacaatctcagctagtccaatgataattcaaccagaatatgataaaagcctaccagactcatgttcaatatattattctaaa |
315 |
Q |
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| T |
25797373 |
ctccatgtgatagttgcaaacaatctcagctagtccaatgataattcaaccagaatatgataaaagtctaccggactcatgttcaatatattattctaaa |
25797472 |
T |
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| Q |
316 |
tagagtctggggataaaaacaaatttataaattcatatca |
355 |
Q |
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| T |
25797473 |
tagagtctggggataaaaacagatttataaattcatatca |
25797512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 34 - 270
Target Start/End: Original strand, 25804664 - 25804912
Alignment:
| Q |
34 |
cttggaggttccgatggaaccatggcattagcagcagtttactgctgaacctgctctggtgctaccacattagttgtctgcacagaatttacttgcagcc |
133 |
Q |
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| T |
25804664 |
cttggaggttcccaaggaaccatgacagcagcagaagtttgctgctgaacctgctctggtgctaccacattagttgtctgcacagaatttacatacagcc |
25804763 |
T |
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| Q |
134 |
aagactgc--ataatggctctcgctagctgtacgctcaattctgtagtttctt----------gcacagcttcctattcctcatcttccaaattctccat |
221 |
Q |
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| T |
25804764 |
aagactgcatatactggttctcgcacactgtacaatctggtctgtagtttcttacacaccttaccacaacttcctattcctcatcttttaaattctccat |
25804863 |
T |
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| Q |
222 |
gtgatagttgcaaacaatctcagctagtccaatgataattcaaccagaa |
270 |
Q |
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| T |
25804864 |
gagatagttgcaaacaatctcaacaggtccaataataattcaaccagaa |
25804912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 270
Target Start/End: Complemental strand, 97068 - 96825
Alignment:
| Q |
34 |
cttggaggttccgatggaaccatggcattagcagcagtttactgctgaacctgctctggtgctaccacattagttgtctgcacagaatttacttgcagcc |
133 |
Q |
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|||||||||||| | ||||||||| || ||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||||||| | ||||| |
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| T |
97068 |
cttggaggttcccaaggaaccatgacagcagcagaagtttgctgctgaacctgctctggt-----cgcattagttgtctgcacagaatttacatacagcc |
96974 |
T |
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| Q |
134 |
aagactgcataa--tggctctcgctagctgtacgctcaattctgtagtttcttgcacagctt----------cctattcctcatcttccaaattctccat |
221 |
Q |
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||||||||||| ||| |||||| | |||| || ||||||||||||| |||| ||| ||||||||||||||| ||||||||||| |
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| T |
96973 |
aagactgcatatactggttctcgcacaccgtacaatctggtctgtagtttcttacacaccttaccacaacttcctattcctcatcttttaaattctccat |
96874 |
T |
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| Q |
222 |
gtgatagttgcaaacaatctcagctagtccaatgataattcaaccagaa |
270 |
Q |
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| T |
96873 |
gagatagttgcaaacaatctcatcaggtccaataataattcaaccagaa |
96825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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