View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_11 (Length: 356)
Name: NF15297_low_11
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 6730491 - 6730164
Alignment:
| Q |
1 |
tccttcattgcaaccccaaagaaactatat-ccatatttcaattaacattcaaatcattttatttggtgtcttgtaaaatacaaagaagcaaggttgtca |
99 |
Q |
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|||||||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6730491 |
tccttcattgcaaccc-aaagaaaagatattccatatctcaattaacattcaaatcattttatttggtgtcttgtaaaatacaaagaagcaaggttgtca |
6730393 |
T |
|
| Q |
100 |
aactcatatactcatacgagtttagctctttttaaaataatattaaaatcatttcttggtggtttgttattactttggttgatgggtcaaatacttctac |
199 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6730392 |
aactgata--------cgagtttagctctttttaaaataatattaaaatcatttcttggtggtttgttattactttggttggtgggtcaaatacttctac |
6730301 |
T |
|
| Q |
200 |
ttaatcccggtttgtgcataaagtgtcaattgtacaatgnnnnnnnctaattaaacttctcaaagtcacctttatattttatgcatataagctcagtttt |
299 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6730300 |
ttaatcccggtttgtgcataaagtgtcgattgtacaatgaaaaaaactaattaaacttctcaaagtcacctttatattttatgcatataagctcagtttt |
6730201 |
T |
|
| Q |
300 |
ttaacaatgnnnnnnnntcaacaatgacatttctact |
336 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
6730200 |
ttaacaatgaaaaaaaatcaacaatgacatttctact |
6730164 |
T |
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