View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_13 (Length: 309)
Name: NF15297_low_13
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 49654774 - 49655069
Alignment:
| Q |
1 |
aatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcannnnnnnn--ctgattttgtttgtt |
98 |
Q |
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| T |
49654774 |
aatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcattttttttttctgattttgtttgtt |
49654873 |
T |
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| Q |
99 |
ctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtcggggggctaatttta |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49654874 |
ctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtcgggg--ctaatttta |
49654971 |
T |
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| Q |
199 |
catttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgatgttctaatagcct |
296 |
Q |
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| T |
49654972 |
catttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgatgttctaatagcct |
49655069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16486421 - 16486487
Alignment:
| Q |
1 |
aatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
67 |
Q |
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| T |
16486421 |
aatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
16486487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21816489 - 21816423
Alignment:
| Q |
1 |
aatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
67 |
Q |
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| T |
21816489 |
aatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
21816423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 8551537 - 8551505
Alignment:
| Q |
194 |
ttttacatttagaagatcttagtcttaacactg |
226 |
Q |
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| T |
8551537 |
ttttacatttagaagatcttagtcttgacactg |
8551505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 14381262 - 14381210
Alignment:
| Q |
16 |
ttccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
68 |
Q |
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|||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
14381262 |
ttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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