View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15297_low_14 (Length: 297)

Name: NF15297_low_14
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15297_low_14
NF15297_low_14
[»] chr4 (1 HSPs)
chr4 (19-288)||(42176701-42176990)
[»] chr7 (3 HSPs)
chr7 (19-90)||(6693823-6693893)
chr7 (19-90)||(6689073-6689143)
chr7 (19-87)||(33756618-33756685)
[»] chr6 (4 HSPs)
chr6 (19-90)||(794928-794998)
chr6 (19-90)||(8274790-8274860)
chr6 (19-90)||(8270075-8270144)
chr6 (19-90)||(799683-799753)
[»] chr5 (2 HSPs)
chr5 (19-90)||(19941019-19941089)
chr5 (19-90)||(19945773-19945843)
[»] chr1 (1 HSPs)
chr1 (19-90)||(31178343-31178413)
[»] chr8 (1 HSPs)
chr8 (38-82)||(26199795-26199839)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 42176990 - 42176701
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt----------actcacaaaacaaacggg 108  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||  ||||||||||          |||||||||||||||| |    
T  42176990 acgaagttcggccaataatgcctactctccgaactgctgcagatctctttaattaaaaagagaaatatatgtgtttacaaacactcacaaaacaaacgag 42176891  T
Q  109 ttacaaacaagagcaggtaccaaattttgttaggctgtcttgacaagagaaggaaaagatcttcctttttt-gttgagaaaattgtga---------caa 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||    
T  42176890 ttacaaacaagagcaggaaccaaattttgttaggctgtcttgacaagagaaggaaaagatcttcctttttttgttgagaaaattgtgaaaattctgacaa 42176791  T
Q  199 gaacttgaaaagtagagctagtttttacgcattaattaccattttacgaatgattgatgttagtcctttttagattgcattaagcctttg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176790 gaacttgaaaagtagagctagtttttacgcattaattaccattttacgaatgattgatgttagtcctttttagattgcattaagcctttg 42176701  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 6693893 - 6693823
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||    
T  6693893 acgaagttcggccaataatgcctactctccggactgctgcagatctctttaa-taaaaagggaaatatatgt 6693823  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 6689143 - 6689073
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| || ||| ||||| |||||||||| |||||||| ||||||||||    
T  6689143 acgaagttcggccaataatgcctactctccgaactgctgcaaatctctttaa-taaaaagggaaatatatgt 6689073  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 33756685 - 33756618
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatata 87  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||||||||||| |||||||| |||||||    
T  33756685 acgaagttcggccaataatacctactctctggactgctgcagatctctttaa-taaaaagggaaatata 33756618  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 794928 - 794998
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||    
T  794928 acgaagttcggccaataatgcctactctccggactgctgcagatctctttaa-taaaaagggaaatatatgt 794998  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 8274860 - 8274790
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||    
T  8274860 acgaagttcggccaataatgcctactctccggactgctgcagatctctttaa-taaaaagggaaatatatgt 8274790  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 8270144 - 8270075
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||||||    
T  8270144 acgaagttcggccaataatgcctactctccggactgctgcagatctctttaat--aaaagggaaatatatgt 8270075  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 799683 - 799753
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||| ||||||||||    
T  799683 acgaagttcggccaataatgcctactctccggactgctgcatatctctttaa-taaaaagggaaatatatgt 799753  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 19941089 - 19941019
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||    
T  19941089 acgaagtttggccaataatgcctactctccggactgctgcagatctctttaa-taaaaagggaaatatatgt 19941019  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 19945843 - 19945773
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||    
T  19945843 acgaagtttggccaataatgcctactctccggactgctgcagatctctttaa-taaaaagggaaatatatgt 19945773  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 31178343 - 31178413
Alignment:
Q  19 acgaagttcggccaataatgcctactcttcggacttctgcagatctctttaattaaaaaggaaaatatatgt 90  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||| |||||||| ||||||||||    
T  31178343 acgaagttcggccaataatgcctactctccggactgttgcagatctctttaa-taaaaagggaaatatatgt 31178413  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 26199839 - 26199795
Alignment:
Q  38 gcctactcttcggacttctgcagatctctttaattaaaaaggaaa 82  Q
    ||||||||| |||||| ||||||||||||||||| |||| |||||    
T  26199839 gcctactctccggactgctgcagatctctttaataaaaagggaaa 26199795  T

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