View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_17 (Length: 248)
Name: NF15297_low_17
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 34963185 - 34963404
Alignment:
| Q |
18 |
aatgttcctacataaagagacaatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagtta |
117 |
Q |
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| T |
34963185 |
aatgttcctacataaagagacaatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagtta |
34963284 |
T |
|
| Q |
118 |
taacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34963285 |
taacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgttgc |
34963384 |
T |
|
| Q |
218 |
tatagctacggcatcttcat |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
34963385 |
tatagctacggcatcttcat |
34963404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 8957657 - 8957457
Alignment:
| Q |
17 |
aaatgttcctacataaagagacaatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagtt |
116 |
Q |
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| T |
8957657 |
aaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccttgaaattctctatccatagttccagcagccacagtt |
8957558 |
T |
|
| Q |
117 |
ataacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgttg |
216 |
Q |
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| T |
8957557 |
atgacccaaggtgttccattgtgaagagtttcaagggcaggaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgttg |
8957458 |
T |
|
| Q |
217 |
c |
217 |
Q |
| |
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| |
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|
| T |
8957457 |
c |
8957457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 8962584 - 8962468
Alignment:
| Q |
104 |
agcagccacagttataacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccata |
203 |
Q |
| |
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|||||| |||||||| ||||| ||| |||||||||| | || |||| || ||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
8962584 |
agcagcaacagttatcacccatggtattccattgtgaagagtgttaaaggaaggtccattattacctgctgaagtagacacaaaaacacctttttccata |
8962485 |
T |
|
| Q |
204 |
gctgcaaatgttgctat |
220 |
Q |
| |
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| T |
8962484 |
gctgcaaaagtggctat |
8962468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 8946459 - 8946613
Alignment:
| Q |
57 |
ccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagttataacccaaggtgttccattgtgtaatgttttaagggctg |
156 |
Q |
| |
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||||| |||||||||| |||| | ||||| || | ||||||||| |||||||| |||||| | | ||| |||||||||||| | | ||||||| | | |
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| T |
8946459 |
ccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattgcgaagagttttaaaatcgg |
8946558 |
T |
|
| Q |
157 |
gtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaa |
211 |
Q |
| |
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| || | ||| ||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
8946559 |
ggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaa |
8946613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 8973979 - 8973877
Alignment:
| Q |
105 |
gcagccacagttataacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccatag |
204 |
Q |
| |
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||||| || ||||| ||||| ||| |||||||||| | ||||||| || ||||||| ||| |||||||||||||| |||| |||||| ||||||||| |
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| T |
8973979 |
gcagcaacggttattacccatggtattccattgtgaagagttttaaaggaaggtccatcattacctgctgaagtagacacaacaacacccctttccatag |
8973880 |
T |
|
| Q |
205 |
ctg |
207 |
Q |
| |
|
||| |
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|
| T |
8973879 |
ctg |
8973877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 21687607 - 21687764
Alignment:
| Q |
57 |
ccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagttataacccaaggtgttccattgtgtaatgttttaagggctg |
156 |
Q |
| |
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||||| |||||||||||||| ||| ||| || | ||||| ||| |||||||| |||||||| ||||| ||| ||||||| || | | ||||| | | |
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| T |
21687607 |
ccattaccaagtgtaacagttcctaaaaattcacgatccaaagtaccagcagcaacagttatcacccatggtattccattatgaatagatttaaacgagg |
21687706 |
T |
|
| Q |
157 |
gtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgt |
214 |
Q |
| |
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|||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||| |
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| T |
21687707 |
gtccattattacctgcagaagtagacacaaaaatacctttttccatagctgcaaatgt |
21687764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 49007551 - 49007434
Alignment:
| Q |
120 |
acccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgttgcta |
219 |
Q |
| |
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||||| |||||||||||||| | |||| ||| ||||||| | || ||||| || ||||| ||||||| ||| ||||||||||||||||| |||| |
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| T |
49007551 |
acccatggtgttccattgtggagagtttcaagcactggtcctctgttccctgcagatgtagatacaaaaatgtttttctccatagctgcaaatgtggcta |
49007452 |
T |
|
| Q |
220 |
tagctacggcatcttcat |
237 |
Q |
| |
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||||||| | |||||||| |
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| T |
49007451 |
tagctacaggatcttcat |
49007434 |
T |
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