View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_18 (Length: 239)
Name: NF15297_low_18
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12648078 - 12648302
Alignment:
| Q |
1 |
caagccccatttcaatgattcattgcatagaccacaccctcacacaaatgcttatacctaccaagtcacgattatgagagaaaggtgcatcaacattgca |
100 |
Q |
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| T |
12648078 |
caagccccatttcaatgattcattgcatagaccacaccctcacacaaatgcttatacctaccaagtcacgattatgagagaaaggtgcatcaacattgca |
12648177 |
T |
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| Q |
101 |
tttcaggaatttagcattgggagggagcaacgttataatatggctttggggctgctgttgctcaatctccccttccattgtcgtagcatatttgccactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12648178 |
tttcaggaatttagcattgggagggagcaacgttttaatatggctttggggctgctgttgctcaatctccccttccattgtcgtagcatatttgccactt |
12648277 |
T |
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| Q |
201 |
gtgtataatatctccattccacagg |
225 |
Q |
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||||||||||| ||||||||||||| |
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| T |
12648278 |
gtgtataatatttccattccacagg |
12648302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 12655198 - 12655300
Alignment:
| Q |
20 |
tcattgcatagaccacaccctcacacaaatgcttatacctaccaagtcacgattatgagagaaaggtgcatcaacattgcatttcaggaatttagcattg |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
12655198 |
tcattgcatagaccacaccctcacataaatgcttatacctaccaagtcacgaatatgagagaaagatgcatcaatattgcatttcaggaatttagcattg |
12655297 |
T |
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| Q |
120 |
gga |
122 |
Q |
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||| |
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| T |
12655298 |
gga |
12655300 |
T |
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