View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15297_low_3 (Length: 460)
Name: NF15297_low_3
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 58 - 444
Target Start/End: Complemental strand, 2665276 - 2664890
Alignment:
| Q |
58 |
tatatgtactaataatactaataataatgtgaaggataaaaaactaatcatggagaaaactgagttcttctttctacttcttgctacttgtttccattta |
157 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2665276 |
tataagtactaataataataataataatgtgaaggataaaaaactaatcatggagaaaactgagttcatctttctacttcttgctacttgtttccattta |
2665177 |
T |
|
| Q |
158 |
acaacattgtttccaataccttcaaaagcagaagataccataactccaccgcaattcatcactggtaaccaaacactaatttcaccttcacaaaattttg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2665176 |
acaacattgtttccaataccttcaaaagcagaagataccataactccaccacaattcatcactggtaaccaaacactaatttcaccttcacaaaattttg |
2665077 |
T |
|
| Q |
258 |
aacttggtttctttacacctaaaaattccacttacacttatcttggaatatggtataagcaaattcacataaagaatattgtttgggttgcaaatagaga |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2665076 |
aacttggtttctttacacctaaaaattccacttacacttatcttggaatatggtataagcaaattcacataaagaatattgtttgggttgcaaatagaga |
2664977 |
T |
|
| Q |
358 |
taaaccacttcttgatcacaatggtacattaacattcaacaatgatggaaaactcattattcttaactacggaggaagtgttctatg |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2664976 |
taaaccacttcttgatcacaatggtacattaacattcaacaatgatggaaaactcattattcttaactacggaggaagtgttctatg |
2664890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 5042074 - 5042120
Alignment:
| Q |
20 |
acgagcctctatccaaacaataatccaaaactatatattatatgtac |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5042074 |
acgagcctctatccaaacaataatccaaaactatatattatatgtac |
5042120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University