View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_8 (Length: 430)
Name: NF15297_low_8
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 12648101 - 12647701
Alignment:
| Q |
11 |
aatgaatcattgaaatggggcttgaggatgtggtctttgagcttgatgctgagcttgtcgctgactcatttcacaatcctcaaaacaaataaatcggaat |
110 |
Q |
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| T |
12648101 |
aatgaatcattgaaatggggcttgaggatgtggtctttgagcttgatgctgagcttgtcgctgactcatttcacaatcctcaaaacaaataaatcggaat |
12648002 |
T |
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| Q |
111 |
tcgattgtatcattcagttatgtcgtactttatttcataatttccacaactccatagctgaattctctaaggggaaacctaatagaccgacctatacttt |
210 |
Q |
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| T |
12648001 |
tcgattgtatcattcagttatgtcgtactttatttcataatttccacaactccatagctgaattctctaaggggaaacctaatagaccgacctatacttt |
12647902 |
T |
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| Q |
211 |
atcaaaggcagctctagacatgatttttcctcaannnnnnnatcatattcctaccttatttgataaaatactaatcaaagcacaaagtatgctacaatta |
310 |
Q |
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| T |
12647901 |
atcaaaggcagctctagacatgatttttcctcaa-atttttatcatattcctaccttatttgataaaatactaatcaaagcacaaagtatgctacaatta |
12647803 |
T |
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| Q |
311 |
aggtagaaaataataccatcaaaaaccagtttaatgtactgcaaaaatacacgagcaaagcaataatccaattatgttagccatccagacagacgtttaa |
410 |
Q |
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| T |
12647802 |
aggtagaaaataataccatcaaaaaccagtttaatgtactgcaaaaatacatgagcaaagcaataatccaattatgttagccatccagacagacgtttaa |
12647703 |
T |
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| Q |
411 |
ag |
412 |
Q |
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| T |
12647702 |
ag |
12647701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 12653115 - 12653023
Alignment:
| Q |
252 |
atcatattcctaccttatttgataaaatactaatcaaagcacaaagtatgctacaattaaggtagaaaataataccatcaaaaaccagtttaat |
345 |
Q |
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| T |
12653115 |
atcatattccaaccttatttgataaaatactaatcaaagcacaaaatatgctacgattaaggtagaaaataaca-aatcaaaaaccagtctaat |
12653023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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