View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15297_low_9 (Length: 396)
Name: NF15297_low_9
Description: NF15297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15297_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 7643494 - 7643656
Alignment:
| Q |
51 |
aaatgcacatattgacggacctatctaaggattctttataatcctaaagtcttcaacaataccgataagaattagctttgaaaaacaactctatatcact |
150 |
Q |
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| T |
7643494 |
aaatgcacatattgacggacctatttaaggattctttataatcctaaagtcttcaacaataccgataagaattagctttgaaaaacaactctatatcact |
7643593 |
T |
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| Q |
151 |
ttaaatagtgccaacagagattgccacttttttgaaatgtaacttgttaatatgaatttaata |
213 |
Q |
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| T |
7643594 |
ttaaatagtgccaacagagattgccacttttttgaaatgtaacttgttaatatgaatttaata |
7643656 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 7643771 - 7643837
Alignment:
| Q |
327 |
gtattctcctatataatagatatttcgtagtgctattccgacacactattttcaacatatctttctt |
393 |
Q |
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| T |
7643771 |
gtattctcctatataatagatatttcgtagtgctattccgacacactattttcaacatatctttctt |
7643837 |
T |
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