View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15298_high_14 (Length: 266)
Name: NF15298_high_14
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 39556448 - 39556552
Alignment:
| Q |
12 |
tcatcaccaagttgcatactcacaaataacattcaccaccaaagtcatggatttgagatatgaataccaagaagtaagttttttctttcacgttcaaaat |
111 |
Q |
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| T |
39556448 |
tcatcaccaatttgcatactcacaaataacattcaccaccaaagtcatggatttgagatatgaataccaagaagtatgttttttctttcacgttcaaaat |
39556547 |
T |
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| Q |
112 |
tcttc |
116 |
Q |
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||||| |
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| T |
39556548 |
tcttc |
39556552 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 39556621 - 39556690
Alignment:
| Q |
190 |
cagggatattggaagaactcaaggggaatgcgactcttcacatgcaagtggttgcctatttcttcttctc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556621 |
cagggatattggaagaactcaaggggaatgcgactcttcacatgcaagtggttgcctatttcttcttctc |
39556690 |
T |
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