View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15298_high_17 (Length: 223)

Name: NF15298_high_17
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15298_high_17
NF15298_high_17
[»] chr1 (1 HSPs)
chr1 (88-205)||(15156820-15156938)
[»] chr7 (2 HSPs)
chr7 (93-205)||(19808513-19808623)
chr7 (1-62)||(19808685-19808746)
[»] chr8 (2 HSPs)
chr8 (88-205)||(25555600-25555709)
chr8 (88-161)||(25549303-25549376)
[»] chr6 (1 HSPs)
chr6 (88-205)||(22621233-22621342)
[»] chr3 (1 HSPs)
chr3 (88-161)||(20011156-20011229)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 15156938 - 15156820
Alignment:
Q  88 aattatattgtgtgcagttattttcta-gaatgtgtatattctgttatataaataaagaaaagtcatacttaatagttatcttagaattattgtgtggtt 186  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15156938 aattatattgtgtgctgttattttctaagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggtt 15156839  T
Q  187 cattagaaaaggagagaca 205  Q
    |||||| ||||||||||||    
T  15156838 cattaggaaaggagagaca 15156820  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 19808513 - 19808623
Alignment:
Q  93 tattgtgtgcagttattttctagaatgtgtatattctgttatataaataaagaaaagtcatacttaatagttatcttagaattattgtgtggttcattag 192  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |    
T  19808513 tattgtgtgcagttattttctagaatgtgtat--tctgttatataaataaagaatagtcagacttaatagttatcttagaattattgtgtggttcattgg 19808610  T
Q  193 aaaaggagagaca 205  Q
    |||||||||||||    
T  19808611 aaaaggagagaca 19808623  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19808746 - 19808685
Alignment:
Q  1 tattgaatattctctggggaaaggttccctaatcagagataaatatacaatcacacacttgt 62  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19808746 tattgaatattctctggggaaaggtttcctaatcagagataaatatacaatcacacacttgt 19808685  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 25555600 - 25555709
Alignment:
Q  88 aattatattgtgtgcagttattttctagaatgtgtatattctgttatataaataaagaaaagtcatacttaatagttatcttagaattattgtgtggttc 187  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||        ||||| ||||||||| ||    
T  25555600 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 25555691  T
Q  188 attagaaaaggagagaca 205  Q
    ||||| ||||||||||||    
T  25555692 attaggaaaggagagaca 25555709  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 25549303 - 25549376
Alignment:
Q  88 aattatattgtgtgcagttattttctagaatgtgtatattctgttatataaataaagaaaagtcatacttaata 161  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  25549303 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata 25549376  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 22621342 - 22621233
Alignment:
Q  88 aattatattgtgtgcagttattttctagaatgtgtatattctgttatataaataaagaaaagtcatacttaatagttatcttagaattattgtgtggttc 187  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||        ||||| ||||||||| ||    
T  22621342 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 22621251  T
Q  188 attagaaaaggagagaca 205  Q
    ||||| ||||||||||||    
T  22621250 attaggaaaggagagaca 22621233  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 20011229 - 20011156
Alignment:
Q  88 aattatattgtgtgcagttattttctagaatgtgtatattctgttatataaataaagaaaagtcatacttaata 161  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  20011229 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata 20011156  T

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