View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15298_high_18 (Length: 219)

Name: NF15298_high_18
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15298_high_18
NF15298_high_18
[»] chr2 (18 HSPs)
chr2 (161-204)||(36520838-36520881)
chr2 (161-204)||(580841-580884)
chr2 (161-204)||(30474253-30474296)
chr2 (162-204)||(1836583-1836625)
chr2 (163-204)||(20122533-20122574)
chr2 (160-204)||(36481062-36481106)
chr2 (161-204)||(2114493-2114536)
chr2 (161-204)||(8234850-8234893)
chr2 (162-197)||(15690099-15690134)
chr2 (161-204)||(39726492-39726535)
chr2 (162-204)||(7086248-7086290)
chr2 (162-204)||(10262734-10262776)
chr2 (162-204)||(15392269-15392311)
chr2 (166-204)||(22297510-22297548)
chr2 (162-204)||(22538534-22538576)
chr2 (162-204)||(31564090-31564132)
chr2 (163-204)||(32988346-32988387)
chr2 (163-204)||(38530253-38530294)
[»] chr1 (23 HSPs)
chr1 (158-204)||(18923943-18923989)
chr1 (160-203)||(9408673-9408716)
chr1 (162-204)||(38020006-38020048)
chr1 (159-204)||(29331222-29331267)
chr1 (163-204)||(48110525-48110566)
chr1 (160-204)||(23930602-23930646)
chr1 (164-204)||(29442025-29442065)
chr1 (161-204)||(4354163-4354206)
chr1 (165-204)||(4429540-4429579)
chr1 (161-204)||(5172660-5172703)
chr1 (161-204)||(15774370-15774413)
chr1 (161-204)||(37490884-37490927)
chr1 (161-204)||(42831941-42831984)
chr1 (161-204)||(43555932-43555975)
chr1 (162-204)||(3533031-3533073)
chr1 (162-204)||(20357455-20357497)
chr1 (162-204)||(20562458-20562500)
chr1 (162-204)||(21884570-21884612)
chr1 (162-204)||(24661977-24662019)
chr1 (162-204)||(49010758-49010800)
chr1 (160-204)||(8261733-8261777)
chr1 (161-197)||(46116239-46116275)
chr1 (160-204)||(49251453-49251497)
[»] chr4 (25 HSPs)
chr4 (22-59)||(14259073-14259110)
chr4 (160-204)||(47018004-47018048)
chr4 (165-204)||(20181209-20181248)
chr4 (162-204)||(50657875-50657917)
chr4 (160-204)||(50783492-50783536)
chr4 (161-204)||(4722522-4722565)
chr4 (161-204)||(9172429-9172472)
chr4 (161-204)||(17859772-17859815)
chr4 (161-204)||(20753183-20753226)
chr4 (165-204)||(32885686-32885725)
chr4 (161-204)||(46735027-46735070)
chr4 (161-204)||(52743222-52743265)
chr4 (162-204)||(548945-548987)
chr4 (162-204)||(5430423-5430465)
chr4 (162-204)||(9285717-9285759)
chr4 (162-204)||(20266857-20266899)
chr4 (162-204)||(24234132-24234174)
chr4 (166-204)||(35031382-35031420)
chr4 (162-204)||(56546507-56546549)
chr4 (163-204)||(52560760-52560801)
chr4 (163-204)||(55266493-55266534)
chr4 (160-204)||(12856177-12856221)
chr4 (160-192)||(37274591-37274623)
chr4 (160-204)||(40200814-40200858)
chr4 (168-204)||(52608625-52608661)
[»] chr8 (20 HSPs)
chr8 (161-204)||(9524951-9524994)
chr8 (161-204)||(23857382-23857425)
chr8 (161-204)||(41225723-41225766)
chr8 (162-204)||(15042423-15042465)
chr8 (162-204)||(24608541-24608583)
chr8 (162-204)||(28465613-28465655)
chr8 (162-204)||(29108657-29108699)
chr8 (162-204)||(39484428-39484470)
chr8 (161-204)||(7649523-7649566)
chr8 (159-194)||(8682373-8682408)
chr8 (161-204)||(9737418-9737461)
chr8 (161-204)||(17980276-17980319)
chr8 (161-204)||(25689505-25689548)
chr8 (161-204)||(34073297-34073340)
chr8 (161-204)||(40249938-40249981)
chr8 (162-197)||(43468770-43468805)
chr8 (161-204)||(43847696-43847739)
chr8 (162-204)||(27558928-27558970)
chr8 (159-204)||(5184945-5184990)
chr8 (159-204)||(40329263-40329308)
[»] chr7 (23 HSPs)
chr7 (161-204)||(8195909-8195952)
chr7 (161-204)||(49012392-49012435)
chr7 (22-59)||(46458933-46458970)
chr7 (161-204)||(7263056-7263099)
chr7 (161-204)||(30644163-30644206)
chr7 (162-197)||(34948101-34948136)
chr7 (161-204)||(36316032-36316075)
chr7 (161-204)||(38778737-38778780)
chr7 (163-202)||(45197314-45197353)
chr7 (162-204)||(4818015-4818057)
chr7 (162-204)||(21925470-21925512)
chr7 (162-204)||(22741198-22741240)
chr7 (162-204)||(22966016-22966058)
chr7 (162-204)||(29710158-29710200)
chr7 (166-204)||(30152740-30152778)
chr7 (162-204)||(34962030-34962072)
chr7 (162-204)||(44437883-44437925)
chr7 (166-204)||(47552212-47552250)
chr7 (167-204)||(4590664-4590701)
chr7 (167-204)||(22047520-22047557)
chr7 (168-204)||(27047773-27047809)
chr7 (160-204)||(42887147-42887191)
chr7 (168-204)||(46716334-46716370)
[»] chr6 (13 HSPs)
chr6 (161-204)||(12089091-12089134)
chr6 (161-204)||(22389808-22389851)
chr6 (162-204)||(19642605-19642647)
chr6 (162-203)||(7563635-7563676)
chr6 (159-204)||(9491793-9491838)
chr6 (161-204)||(10377182-10377225)
chr6 (161-204)||(22501012-22501055)
chr6 (161-204)||(34365729-34365772)
chr6 (162-204)||(8233081-8233123)
chr6 (166-204)||(12127967-12128005)
chr6 (162-204)||(30566053-30566095)
chr6 (162-204)||(32057029-32057071)
chr6 (168-204)||(31741521-31741557)
[»] chr3 (20 HSPs)
chr3 (161-204)||(33206751-33206794)
chr3 (162-204)||(49639023-49639065)
chr3 (161-197)||(42271078-42271114)
chr3 (161-204)||(24751318-24751361)
chr3 (161-204)||(34503209-34503252)
chr3 (161-204)||(35483263-35483306)
chr3 (161-204)||(43566854-43566897)
chr3 (161-204)||(54983767-54983810)
chr3 (162-204)||(16278009-16278051)
chr3 (162-204)||(17440023-17440065)
chr3 (162-204)||(21420247-21420289)
chr3 (162-204)||(23820624-23820666)
chr3 (166-204)||(40786279-40786317)
chr3 (162-204)||(50720417-50720459)
chr3 (162-204)||(50792389-50792431)
chr3 (163-204)||(13540022-13540063)
chr3 (163-204)||(49146080-49146121)
chr3 (159-204)||(50724360-50724404)
chr3 (159-204)||(50788444-50788488)
chr3 (162-198)||(36256731-36256767)
[»] chr5 (18 HSPs)
chr5 (163-204)||(18872517-18872558)
chr5 (160-197)||(19059069-19059106)
chr5 (161-204)||(32158472-32158515)
chr5 (161-204)||(40339157-40339200)
chr5 (166-204)||(18478002-18478040)
chr5 (162-204)||(21017664-21017706)
chr5 (162-204)||(22599993-22600035)
chr5 (162-204)||(27219621-27219663)
chr5 (162-204)||(29050795-29050837)
chr5 (166-204)||(29841347-29841385)
chr5 (162-204)||(33800888-33800930)
chr5 (162-204)||(36888151-36888193)
chr5 (159-204)||(843426-843471)
chr5 (163-204)||(7645160-7645201)
chr5 (167-204)||(29096366-29096403)
chr5 (167-204)||(30394569-30394606)
chr5 (168-204)||(27440356-27440392)
chr5 (162-202)||(43404377-43404417)
[»] scaffold1086 (1 HSPs)
scaffold1086 (162-204)||(2483-2525)
[»] scaffold0008 (1 HSPs)
scaffold0008 (167-204)||(43754-43791)


Alignment Details
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 36520881 - 36520838
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  36520881 tgtcccgtgagcgtagctcagttggtaggacaatgcattattat 36520838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 580884 - 580841
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  580884 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 580841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 30474296 - 30474253
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  30474296 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 30474253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 1836583 - 1836625
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  1836583 gtcccgtgagcctagctcagttggtaggacaatgcattattat 1836625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 20122574 - 20122533
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  20122574 tcccgtgagcatagctcagttggtaggacaatgcattattat 20122533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 36481062 - 36481106
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||    
T  36481062 gtgttccgtgagcatagctcagttggtaggacaatgcattattat 36481106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 2114536 - 2114493
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||    
T  2114536 tgtcccgtgagcatagctcagttggtagaacaatgcattattat 2114493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 8234893 - 8234850
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||||||| || ||||||    
T  8234893 tgtcccgtgagcatagctcagttggtaggacaatacattattat 8234850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 15690134 - 15690099
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgca 197  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15690134 gtcccgtgagcatagctcagttggtaggacaatgca 15690099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 39726535 - 39726492
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  39726535 tgtcccgtgagtctagctcagttggtaggacaatgcattattat 39726492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 7086248 - 7086290
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||    
T  7086248 gtcccgtgagcatagctcagttggtagggcaatgcattattat 7086290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 10262734 - 10262776
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  10262734 gtcccgtgagcataactcagttggtaggacaatgcattattat 10262776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15392311 - 15392269
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  15392311 gtcccgtgagcataactcagttggtaggacaatgcattattat 15392269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 22297548 - 22297510
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  22297548 cgtgagcatagctcagttggtaggacaatgcattattat 22297510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 22538534 - 22538576
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  22538534 gtcccgtgagcctaactcagttggtaggacaatgcattattat 22538576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 31564090 - 31564132
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  31564090 gtcccgtgagcataactcagttggtaggacaatgcattattat 31564132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 32988346 - 32988387
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| |||||||||||||| ||||||||| ||||||    
T  32988346 tcccgtgagcatagctcagttggtaagacaatgcattattat 32988387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 38530294 - 38530253
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| ||| |||||||||||||||||||||||| ||||||    
T  38530294 tcccgtaagcttagctcagttggtaggacaatgcattattat 38530253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 18923989 - 18923943
Alignment:
Q  158 gagtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  18923989 gagtgtcccgtgagcatagctcagttggtaggacaatgcattattat 18923943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 9408716 - 9408673
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtatta 203  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  9408716 gtgtcccgtgagcatagctcagttggtaggacaatgcattatta 9408673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 38020048 - 38020006
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  38020048 gtcccgtgagcatagctcagttggtaggacaatgcattattat 38020006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 29331267 - 29331222
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||    
T  29331267 agtgtcccgtgagcatagcttagttggtaggacaatgcattattat 29331222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 48110525 - 48110566
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  48110525 tcccgtgagcgtagctcagttggtagaacaatgcattattat 48110566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 23930646 - 23930602
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||    
T  23930646 gtgtcccgtgagcatagttcagttggtaggacaatgcattattat 23930602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 29442065 - 29442025
Alignment:
Q  164 cccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  29442065 cccgtgagcatagctcagttggtaggacaatgcattattat 29442025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 4354206 - 4354163
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||    
T  4354206 tgtcctgtgagcatagctcagttggtaggacaatgcattattat 4354163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 4429579 - 4429540
Alignment:
Q  165 ccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  4429579 ccgtgagcatagctcagttggtaggacaatgcattattat 4429540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 5172703 - 5172660
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||    
T  5172703 tgtcccgtgagcatagctcagttgataggacaatgcattattat 5172660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 15774413 - 15774370
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| || ||||||||||||||||||||| ||||||    
T  15774413 tgtcccgtgagcataactcagttggtaggacaatgcattattat 15774370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 37490884 - 37490927
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| || ||||||||||||||||||||| ||||||    
T  37490884 tgtcccgtgagcataactcagttggtaggacaatgcattattat 37490927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 42831941 - 42831984
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||    
T  42831941 tgtcccgtgagcatagctcagttggtaggacattgcattattat 42831984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 43555975 - 43555932
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||    
T  43555975 tgtctcgtgagcatagctcagttggtaggacaatgcattattat 43555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 3533073 - 3533031
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||    
T  3533073 gtcccgtgagcatagctcagttagtaggacaatgcattattat 3533031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 20357455 - 20357497
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  20357455 gtcccgtgagcataactcagttggtaggacaatgcattattat 20357497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 20562500 - 20562458
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  20562500 gtcccgtgagcataactcagttggtaggacaatgcattattat 20562458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 21884570 - 21884612
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  21884570 gtcccgtgagcatagctcaattggtaggacaatgcattattat 21884612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 24661977 - 24662019
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  24661977 gtcccgtgagcatagctcaattggtaggacaatgcattattat 24662019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 49010800 - 49010758
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||| | ||||||    
T  49010800 gtcccgtgagcatagctcagttggtaggacaatgtattattat 49010758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 8261777 - 8261733
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| |||||||| ||||||||||||||||| |||||| ||||||    
T  8261777 gtgttccgtgagcatagctcagttggtaggataatgcattattat 8261733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 46116275 - 46116239
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgca 197  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  46116275 tgtcccgtgagcatagcttagttggtaggacaatgca 46116239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 49251497 - 49251453
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||||| || ||||||||||||||||||||| ||||||    
T  49251497 gtgtcctgtgagcataactcagttggtaggacaatgcattattat 49251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 14259073 - 14259110
Alignment:
Q  22 tactgattcaaatagctctgaaaaatcaactacaatcc 59  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14259073 tactgattcaaatagctctgaaaaatcaactacaatcc 14259110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 47018048 - 47018004
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    
T  47018048 gtgtcccgtgagcatagctcagttggtaggacaatgcattattat 47018004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 20181209 - 20181248
Alignment:
Q  165 ccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  20181209 ccgtgagcatagctcagttggtaggacaatgcagtattat 20181248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 50657875 - 50657917
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  50657875 gtcccgtgagcatagctcagttggtaggacaatgcattattat 50657917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 50783536 - 50783492
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||    
T  50783536 gtgtcccgtgagcatagctcagttggtaggacattgcattattat 50783492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 4722565 - 4722522
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| | |||||||||||||||||||||||| ||||||    
T  4722565 tgtcccgtgaacatagctcagttggtaggacaatgcattattat 4722522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 9172472 - 9172429
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| || ||||||||||||||||||||| ||||||    
T  9172472 tgtcccgtgagcataactcagttggtaggacaatgcattattat 9172429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 17859772 - 17859815
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||    
T  17859772 tgtcctgtgagcatagctcagttggtaggacaatgcattattat 17859815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 20753226 - 20753183
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  20753226 tgtcccgtgagcatagctcagttggtaggaaaatgcattattat 20753183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 32885686 - 32885725
Alignment:
Q  165 ccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  32885686 ccgtgagcatagctcagttggtaggacaatgcattattat 32885725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 46735070 - 46735027
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||    
T  46735070 tgtcccgtgagcatagctcagttggtaggacactgcattattat 46735027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 52743222 - 52743265
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||    
T  52743222 tgtcccgtgagcatagctcggttggtaggacaatgcattattat 52743265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 548987 - 548945
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||    
T  548987 gtcccgtgagcatagcccagttggtaggacaatgcattattat 548945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 5430465 - 5430423
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||| | ||||||    
T  5430465 gtcccgtgagcatagctcagttggtaggacaatgtattattat 5430423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 9285759 - 9285717
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  9285759 gtcccgtgagcatagctcaattggtaggacaatgcattattat 9285717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 20266857 - 20266899
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  20266857 gtcccgtgagcttagctcatttggtaggacaatgcattattat 20266899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 24234174 - 24234132
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||    
T  24234174 gtcccgtgagcatagctcagttggtaggtcaatgcattattat 24234132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 35031382 - 35031420
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  35031382 cgtgagcatagctcagttggtaggacaatgcattattat 35031420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 56546549 - 56546507
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  56546549 gtcccgtgagcatagctcaattggtaggacaatgcattattat 56546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 52560760 - 52560801
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| ||||||| |||||||||||||||| ||||||    
T  52560760 tcccgtgagcatagctcaattggtaggacaatgcattattat 52560801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 55266534 - 55266493
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| ||||||||||||||| |||||||| ||||||    
T  55266534 tcccgtgagcatagctcagttggtagaacaatgcattattat 55266493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 12856177 - 12856221
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| |||||||| ||||||||||||||||| |||||| ||||||    
T  12856177 gtgttccgtgagcatagctcagttggtaggataatgcactattat 12856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 37274591 - 37274623
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggaca 192  Q
    ||||||||||||| |||||||||||||||||||    
T  37274591 gtgtcccgtgagcatagctcagttggtaggaca 37274623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 40200858 - 40200814
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| | | |||||||||||||||||||||| ||||||    
T  40200858 gtgtcccgtgaacattgctcagttggtaggacaatgcattattat 40200814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 52608661 - 52608625
Alignment:
Q  168 tgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  52608661 tgagcatagctcagttggtaggacaatgcattattat 52608625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 9524951 - 9524994
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  9524951 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 9524994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 23857425 - 23857382
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  23857425 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 23857382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 41225766 - 41225723
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  41225766 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 41225723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15042465 - 15042423
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  15042465 gtcccgtgagcatagctcagttggtaggacaatgcattattat 15042423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 24608583 - 24608541
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  24608583 gtcccgtgagcatagctcagttggtaggacaatgcattattat 24608541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 28465613 - 28465655
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  28465613 gtcccgtgagcatagctcagttggtaggacaatgcattattat 28465655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 29108657 - 29108699
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  29108657 gtcccgtgagcatagctcagttggtaggacaatgcattattat 29108699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 39484470 - 39484428
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  39484470 gtcccgtgagcatagctcagttggtaggacaatgcattattat 39484428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 7649523 - 7649566
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||    
T  7649523 tgtcccgtgagcatagctcacttggtaggacaatgcattattat 7649566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 8682373 - 8682408
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaat 194  Q
    |||||||||||||| |||||||||||||||||||||    
T  8682373 agtgtcccgtgagcatagctcagttggtaggacaat 8682408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 9737461 - 9737418
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||||||| || ||||||    
T  9737461 tgtcccgtgagcatagctcagttggtaggacaatacattattat 9737418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 17980276 - 17980319
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||    
T  17980276 tgtcccgtgagcatagctcagttggtaggacaaagcattattat 17980319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 25689548 - 25689505
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||    
T  25689548 tgtcccgtgagcatagctcagttggttggacaatgcattattat 25689505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 34073340 - 34073297
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||    
T  34073340 tgtcccgtgagcgtagttcagttggtaggataatgcattattat 34073297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 40249981 - 40249938
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| || ||||||||||||||||||||| ||||||    
T  40249981 tgtcccgtgagcataactcagttggtaggacaatgcattattat 40249938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 43468805 - 43468770
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgca 197  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43468805 gtcccgtgagcatagctcagttggtaggacaatgca 43468770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 43847696 - 43847739
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||    
T  43847696 tgtctcgtgagcatagctcagttggtaggacaatgcattattat 43847739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 27558970 - 27558928
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||    
T  27558970 gtcccgtgagcgtagctcatttggtaggataatgcattattat 27558928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 5184990 - 5184945
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||| |||||||||||||||||||||| | ||||||    
T  5184990 agtgtcctgtgagcatagctcagttggtaggacaatggattattat 5184945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 40329308 - 40329263
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||| |||||| |||||||| |||||||| ||||||    
T  40329308 agtgtcccgtgagcatagctcggttggtagaacaatgcattattat 40329263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 8195909 - 8195952
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  8195909 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 8195952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 49012392 - 49012435
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  49012392 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 49012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 46458933 - 46458970
Alignment:
Q  22 tactgattcaaatagctctgaaaaatcaactacaatcc 59  Q
    |||||||||||||||||||||||| |||||||||||||    
T  46458933 tactgattcaaatagctctgaaaattcaactacaatcc 46458970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 7263099 - 7263056
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  7263099 tgtcccgtgagtatagctcagttggtaggacaatgcattattat 7263056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 30644163 - 30644206
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  30644163 tgtcccgtgagtatagctcagttggtaggacaatgcattattat 30644206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 34948101 - 34948136
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgca 197  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34948101 gtcccgtgagcatagctcagttggtaggacaatgca 34948136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 36316075 - 36316032
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  36316075 tgtcccgtgagcatagctcagttggtaggataatgcattattat 36316032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 38778780 - 38778737
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| || ||||||||||||||||||||| ||||||    
T  38778780 tgtcccgtgagcatatctcagttggtaggacaatgcattattat 38778737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 45197314 - 45197353
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtatt 202  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  45197314 tcccgtgagcatagctcagttggtaggacaatgcattatt 45197353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 4818015 - 4818057
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| | |||||||||||||||||||||| ||||||    
T  4818015 gtcccgtgagcatcgctcagttggtaggacaatgcattattat 4818057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 21925470 - 21925512
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  21925470 gtcccgtgagcatagctcaattggtaggacaatgcattattat 21925512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 22741198 - 22741240
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||    
T  22741198 gtcccgtgagcatagctcggttggtaggacaatgcattattat 22741240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 22966058 - 22966016
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  22966058 gtcccgtgagcatagctcaattggtaggacaatgcattattat 22966016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 29710200 - 29710158
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  29710200 gtcccgtgagtatagctcagttggtaggacaatgcattattat 29710158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 30152740 - 30152778
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  30152740 cgtgagcttagctcagttggtaggacaatgcattattat 30152778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 34962072 - 34962030
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| |||||| |||||||||||||||||||||||| ||||||    
T  34962072 gtcctgtgagcatagctcagttggtaggacaatgcattattat 34962030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 44437925 - 44437883
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||    
T  44437925 gtcccgtgagcatagctcagttagtaggacaatgcattattat 44437883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 47552212 - 47552250
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  47552212 cgtgagcatagctcagttggtaggacaatgcattattat 47552250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 4590701 - 4590664
Alignment:
Q  167 gtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  4590701 gtgagcatagctcagttggtaggacaatgcattattat 4590664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 22047520 - 22047557
Alignment:
Q  167 gtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  22047520 gtgagcatagctcagttggtaggacaatgcattattat 22047557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 27047809 - 27047773
Alignment:
Q  168 tgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  27047809 tgagcatagctcagttggtaggacaatgcattattat 27047773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 42887147 - 42887191
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||||| |||||||||||||| |||||| || ||||||    
T  42887147 gtgtcccgtgagcatagctcagttggtacgacaattcattattat 42887191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 46716334 - 46716370
Alignment:
Q  168 tgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  46716334 tgagcatagctcagttggtaggacaatgcattattat 46716370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 12089091 - 12089134
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  12089091 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 12089134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 22389851 - 22389808
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  22389851 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 22389808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 19642647 - 19642605
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  19642647 gtcccgtgagcatagctcagttggtaggacaatgcattattat 19642605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 7563676 - 7563635
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtatta 203  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  7563676 gtcccgtgagcatagctcagttggtaggacaatgcattatta 7563635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 9491838 - 9491793
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||    
T  9491838 agtgtcccgtgagcataactcagttggtaggacaatgcattattat 9491793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 10377225 - 10377182
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  10377225 tgtcccgtgagtatagctcagttggtaggacaatgcattattat 10377182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 22501012 - 22501055
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||    
T  22501012 tgtcccatgagcatagctcagttggtaggacaatgcattattat 22501055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 34365729 - 34365772
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||    
T  34365729 tgtcccgtgagcatagttcagttggtaggacaatgcattattat 34365772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 8233081 - 8233123
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||||||||||||||||| || ||||||    
T  8233081 gtcccgtgagcatagctcagttggtaggacaatacattattat 8233123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 12128005 - 12127967
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  12128005 cgtgagcatagctcagttggtaggacaatgcattattat 12127967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 30566053 - 30566095
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  30566053 gtcccgtgagcataactcagttggtaggacaatgcattattat 30566095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 32057029 - 32057071
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||    
T  32057029 gtcccgtgagcatagctcagttgataggacaatgcattattat 32057071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 31741557 - 31741521
Alignment:
Q  168 tgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  31741557 tgagcatagctcagttggtaggacaatgcattattat 31741521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 33206751 - 33206794
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  33206751 tgtcccgtgagcatagctcagttggtaggacaatgcattattat 33206794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 49639023 - 49639065
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  49639023 gtcccgtgagcatagctcagttggtaggacaatgcattattat 49639065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 42271114 - 42271078
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgca 197  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42271114 tgtcccgtgagcatagctcagttggtaggacaatgca 42271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 24751361 - 24751318
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||    
T  24751361 tgtcccgtgagcatagctcagttagtaggacaatgcattattat 24751318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 34503209 - 34503252
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||    
T  34503209 tgtctcgtgagcatagctcagttggtaggacaatgcattattat 34503252  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 35483263 - 35483306
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||    
T  35483263 tgtcccgtgagcatagctcagttagtaggacaatgcattattat 35483306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 43566897 - 43566854
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| | |||||||||||||||||||||||| ||||||    
T  43566897 tgtcccgtgaacatagctcagttggtaggacaatgcattattat 43566854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 54983810 - 54983767
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  54983810 tgtcccgtgagcatagctcagttggtaggataatgcattattat 54983767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 16278051 - 16278009
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||    
T  16278051 gtcccgtgagcatagctcagttggtaggaccatgcattattat 16278009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 17440065 - 17440023
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||    
T  17440065 gtcccgtgagcatagctcggttggtaggacaatgcattattat 17440023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 21420289 - 21420247
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  21420289 gtcccgtgagtttagctcagttggtaggacaatgcattattat 21420247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 23820624 - 23820666
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||    
T  23820624 gtcccgtgaacgtaactcagttggtaggacaatgcattattat 23820666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 40786279 - 40786317
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  40786279 cgtgagcatagctcagttggtaggacaatgcattattat 40786317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 50720417 - 50720459
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||    
T  50720417 gtcccgtgagcatagttcagttggtaggacaatgcattattat 50720459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 50792431 - 50792389
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||    
T  50792431 gtcccgtgagcatagttcagttggtaggacaatgcattattat 50792389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 13540063 - 13540022
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||  |||||||||||||||||||||||| ||||||    
T  13540063 tcccgtgagtatagctcagttggtaggacaatgcattattat 13540022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 49146080 - 49146121
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| || ||||||||||||||||||||| ||||||    
T  49146080 tcccgtgagcttaactcagttggtaggacaatgcattattat 49146121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 50724360 - 50724404
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||    
T  50724360 agtgtcccgtgagcatagctcagttggt-ggacaatgcattattat 50724404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 50788488 - 50788444
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||    
T  50788488 agtgtcccgtgagcatagctcagttggt-ggacaatgcattattat 50788444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 36256767 - 36256731
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcag 198  Q
    ||||||||||  |||||||||||||||||||||||||    
T  36256767 gtcccgtgaggatagctcagttggtaggacaatgcag 36256731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 18872517 - 18872558
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  18872517 tcccgtgagcatagctcagttggtaggacaatgcattattat 18872558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 19059106 - 19059069
Alignment:
Q  160 gtgtcccgtgagcgtagctcagttggtaggacaatgca 197  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19059106 gtgtcccgtgagcatagctcagttggtaggacaatgca 19059069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 32158515 - 32158472
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||    
T  32158515 tgtcccgtgagcttagctcaattggtaggacaatgcattattat 32158472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 40339200 - 40339157
Alignment:
Q  161 tgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||    
T  40339200 tgtcccgtgagcatagctcagttagtaggacaatgcattattat 40339157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 18478002 - 18478040
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  18478002 cgtgagcatagctcagttggtaggacaatgcattattat 18478040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 21017706 - 21017664
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||| | |||||||||||||||||||||||| ||||||    
T  21017706 gtcccgtgaacatagctcagttggtaggacaatgcattattat 21017664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 22600035 - 22599993
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  22600035 gtcccgtgagcataactcagttggtaggacaatgcattattat 22599993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 27219663 - 27219621
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||    
T  27219663 gtcccgtgagcatagcttagttggtaggacaatgcattattat 27219621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 29050795 - 29050837
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||| |||||||||||||||||||||||| ||||||    
T  29050795 gtcccgcgagcatagctcagttggtaggacaatgcattattat 29050837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 29841347 - 29841385
Alignment:
Q  166 cgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  29841347 cgtgagcatagctcagttggtaggacaatgcattattat 29841385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 33800888 - 33800930
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  33800888 gtcccgtgagcataactcagttggtaggacaatgcattattat 33800930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 36888193 - 36888151
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  36888193 gtcccgtgagcatatctcagttggtaggacaatgcattattat 36888151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 843471 - 843426
Alignment:
Q  159 agtgtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||||||| || ||||||||||| ||||||||| ||||||    
T  843471 agtgtcccgtgagcatatctcagttggtatgacaatgcattattat 843426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 7645201 - 7645160
Alignment:
Q  163 tcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||||||| ||||| |||||||||||||||||| ||||||    
T  7645201 tcccgtgagcatagcttagttggtaggacaatgcattattat 7645160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 29096403 - 29096366
Alignment:
Q  167 gtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  29096403 gtgagcatagctcagttggtaggacaatgcattattat 29096366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 30394569 - 30394606
Alignment:
Q  167 gtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  30394569 gtgagcttagctcagttggtaggacaatgcattattat 30394606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 27440392 - 27440356
Alignment:
Q  168 tgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  27440392 tgagcatagctcagttggtaggacaatgcattattat 27440356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 43404377 - 43404417
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtatt 202  Q
    ||||| ||||| |||||||||||||||||||||||| ||||    
T  43404377 gtcccttgagcatagctcagttggtaggacaatgcattatt 43404417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 2483 - 2525
Alignment:
Q  162 gtcccgtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  2483 gtcccgtgagcataactcagttggtaggacaatgcattattat 2525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 43791 - 43754
Alignment:
Q  167 gtgagcgtagctcagttggtaggacaatgcagtattat 204  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  43791 gtgagcatagctcagttggtaggacaatgcattattat 43754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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