View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15298_high_4 (Length: 452)

Name: NF15298_high_4
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15298_high_4
NF15298_high_4
[»] chr8 (5 HSPs)
chr8 (11-438)||(44890727-44891162)
chr8 (11-85)||(12233741-12233815)
chr8 (104-167)||(12234201-12234264)
chr8 (103-156)||(44890265-44890317)
chr8 (93-165)||(12233675-12233747)
[»] scaffold0027 (1 HSPs)
scaffold0027 (93-167)||(140230-140304)
[»] chr3 (1 HSPs)
chr3 (93-167)||(35564356-35564430)
[»] chr5 (1 HSPs)
chr5 (121-166)||(17262634-17262679)
[»] chr2 (1 HSPs)
chr2 (103-167)||(10472850-10472912)
[»] chr6 (1 HSPs)
chr6 (120-172)||(21604000-21604052)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 44890727 - 44891162
Alignment:
Q  11 tgagatgaatttcatttagtgtttcagatgtgcatcctttgtaatttcaggtttgaagttccgcgctagttaactactctcggtta--------actgtt 102  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||        ||||||    
T  44890727 tgagacgaatttcatttagtgtttcagatctgcatcctttgtaatttcaggtttgaagttcagcggtagttaactactgtcggttaatttgttaactgtt 44890826  T
Q  103 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttccaacattgaatcacttggccaaaatactcatgtac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44890827 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttccaacattgaatcacttggccaaaatactcatgtac 44890926  T
Q  203 ccacttagagcacctcgcatatactcctactccaccgacactcgctccatgacagaaggtttacgattcagcattttaaccagcaaactactgcttcctc 302  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  44890927 ccacttagagcaccttgcatatactcctactccaccgacactcgctccatgacagaaggtttacgattcggcattttaaccagcaaactgctgcttcctc 44891026  T
Q  303 aaaaaactagtttaatttcttgatattaaacagataaaaacgtacactacactttgatcttagccaaaagaccaagaaaaggtggagaaaggtatgaatt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44891027 aaaaaactagtttaatttcttgatattaaacagataaaaacgtacactacactttgatcttagccaaaagaccaagaaaaggtggagaaaggtatgaatt 44891126  T
Q  403 atatgtggtactcacttccacttttatatcatacat 438  Q
    |||||||||||||||||| |||||||||||||||||    
T  44891127 atatgtggtactcacttctacttttatatcatacat 44891162  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 12233815 - 12233741
Alignment:
Q  11 tgagatgaatttcatttagtgtttcagatgtgcatcctttgtaatttcaggtttgaagttccgcgctagttaact 85  Q
    ||||| |||||||||||| |||||||||| |||||||| | |||||| || |||| |||||||||  ||||||||    
T  12233815 tgagacgaatttcatttattgtttcagatctgcatcctctataattttagatttggagttccgcggcagttaact 12233741  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 12234201 - 12234264
Alignment:
Q  104 aaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 167  Q
    ||||||||||||| ||||||| || ||||| | || |||||||||| |||||| ||||||||||    
T  12234201 aaggggtatttcagtattttattggtgtgtataagcttaaacacatgtgtgaacatcaattttc 12234264  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 44890317 - 44890265
Alignment:
Q  103 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaa 156  Q
    |||||||||||||  ||||||||| ||||||||||| |||||||||| ||||||    
T  44890317 gaaggggtatttccgtattttact-atgtgtttcagcttaaacacatgtgtgaa 44890265  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 12233747 - 12233675
Alignment:
Q  93 gttaactgttgaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattt 165  Q
    ||||||||| |||||||||||||  | ||||| |  |||||||||| |||||||||| |||||| | ||||||    
T  12233747 gttaactgtcgaaggggtatttcggtcttttattagtgtgtttcagcttaaacacatgtgtgaacaacaattt 12233675  T

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Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 140230 - 140304
Alignment:
Q  93 gttaactgttgaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 167  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||| ||||||| || |||||| | ||||||||    
T  140230 gttaactgttgaaggtgtatttcgatattttactggtgtgtttcagcttaaacatatgtgtgaacaacaattttc 140304  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 35564356 - 35564430
Alignment:
Q  93 gttaactgttgaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 167  Q
    ||||||||  ||||||||||||   ||||||| ||||||||||||| |||||||| | ||| || ||||||||||    
T  35564356 gttaactgccgaaggggtattttggtattttattgatgtgtttcagcttaaacacgtgtgtaaacatcaattttc 35564430  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 17262679 - 17262634
Alignment:
Q  121 tttactgatgtgtttcaggttaaacacatatgtgaagatcaatttt 166  Q
    |||||||||||||||||| |||||||||| |||||| | |||||||    
T  17262679 tttactgatgtgtttcagtttaaacacatgtgtgaacaacaatttt 17262634  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 10472850 - 10472912
Alignment:
Q  103 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 167  Q
    |||||||||||||  |||||||||| |||||||||| ||||  ||||||||||| | ||||||||    
T  10472850 gaaggggtatttcggtattttactggtgtgtttcagcttaa--acatatgtgaacaacaattttc 10472912  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 21604000 - 21604052
Alignment:
Q  120 ttttactgatgtgtttcaggttaaacacatatgtgaagatcaattttccaaca 172  Q
    ||||||| ||||||||||| |||||||||| |||||| | |||||||| ||||    
T  21604000 ttttactaatgtgtttcagcttaaacacatgtgtgaacaacaattttcaaaca 21604052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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