View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15298_high_5 (Length: 434)
Name: NF15298_high_5
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 16791683 - 16791472
Alignment:
| Q |
10 |
ataatactgctcaaccatccaactgatagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacaggg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16791683 |
ataatactgctcaaccatccaactgatagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacaggg |
16791584 |
T |
|
| Q |
110 |
agaaattaatgaacattgaacacttcaaagcacctgaaagaccagtgaatttagtgttgcgaacgattcaatgctttcaagcttgtttgaattgccaagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16791583 |
agaaattaatgaacattgaacacttcaaagcacctgaaagaccggtgaatttagtgttgcgaacgattcaatgctttcaagcttgtttgaattgccaagt |
16791484 |
T |
|
| Q |
210 |
tgaggcagaatt |
221 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16791483 |
tgaggcagaatt |
16791472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 221 - 419
Target Start/End: Complemental strand, 16791449 - 16791250
Alignment:
| Q |
221 |
ttccaaaaaggggtttacatttacgtctatacgtacttgtaaagcaataaattaaacaaatgcatgcacgttatactttttt-gaataaaaccaagttca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16791449 |
ttccaaaaaggggtttacatttacgtctatacgtacttctaaagcaataaattaaacaaatgcatgcacgttatactttttttgaataaaaccaagttca |
16791350 |
T |
|
| Q |
320 |
cttaaattattttgttaattggtggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaaggaag |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16791349 |
cttaatttattttgttaattggtggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaaggaag |
16791250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 17097221 - 17097106
Alignment:
| Q |
36 |
tagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacagggagaaattaatgaacattgaacacttc |
135 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||||||||||| | | ||||| ||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
17097221 |
tagcgactcaaccagccatactcctctctaacaatgcatctggttaaaccagcgtacaaaatatgcatacagagagaaattaatgagcattgaacacttc |
17097122 |
T |
|
| Q |
136 |
aaagcacctgaaagac |
151 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
17097121 |
gaagtatctgaaagac |
17097106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 16866115 - 16866075
Alignment:
| Q |
379 |
tgcagcagtatccagaagtgaagtgaacaagttgaaggaag |
419 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16866115 |
tgcagcagtgtccagaagtgaagtgaacaagttgaaggaag |
16866075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 17130830 - 17130902
Alignment:
| Q |
342 |
tggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaagg |
416 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| | ||||| | ||| ||||| |||||||||||||||| |
|
|
| T |
17130830 |
tggtaggccaattgcattgattcgaca--gtccctgccgaggcagtgttcagcagtgaggtgaacaagttgaagg |
17130902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University