View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15298_high_6 (Length: 392)
Name: NF15298_high_6
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 234 - 375
Target Start/End: Complemental strand, 32553815 - 32553674
Alignment:
| Q |
234 |
attgctattgctattattgaacttgttttctacatctaatatatttgttgcatatgaggaattctcttcatagcaacaatttgagcttgatgtaacttca |
333 |
Q |
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| T |
32553815 |
attgctattgctattattgaacttgttttctacatctaatatatttgttgcatatgaggaattctcttcatagcaacaatttgagcttgatgtaacttca |
32553716 |
T |
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| Q |
334 |
gaattctgcaaagcttctgggaataattcagtgttacaaagt |
375 |
Q |
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| T |
32553715 |
gaattctgcaaagcttctgggaataattcagtgttacaaagt |
32553674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 32554033 - 32553888
Alignment:
| Q |
16 |
acagaagagaaatcaaattgttctacttgctgtgatgatgtgactggaaggaatgaaggaacattgaaagatggtgatagtgagaaatctattgaggcag |
115 |
Q |
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| T |
32554033 |
acagaagagaaatcaaattgctctacttgctgtgatgatgtgactggaaggaatgaaggaacattgaaagatggtgatagtgagaaatctattgaggcag |
32553934 |
T |
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| Q |
116 |
aaatgtcattgtcaatttcttcttgtgaatcaaagataactgatag |
161 |
Q |
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| T |
32553933 |
aaatgtcattgtcaatttcttcttgtgaatcaaagataactgatag |
32553888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 16921324 - 16921253
Alignment:
| Q |
82 |
aaagatggtgatagtgagaaatctattgaggcagaaatgtcattgtcaatttcttcttgtgaatcaaagata |
153 |
Q |
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| T |
16921324 |
aaagattgtgatgatgtgaaatctatagaagctgaaatgtcattgtcaagatcttcttgtgaatcaaagata |
16921253 |
T |
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