View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15298_low_10 (Length: 367)
Name: NF15298_low_10
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_low_10 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 3340 - 3002
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3340 |
tgatttggagtcataactgtaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
3241 |
T |
|
| Q |
113 |
aaagattggaacctaaa-gattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtgga |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3240 |
aaagattggaacctaaaagattccaagtgattatgtggagtttgacttaataatgaaggtaatggtccgatactgtataatgatgggaacatagagtgga |
3141 |
T |
|
| Q |
212 |
gcgcattcagtacatcactctcaagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3140 |
gcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccat |
3041 |
T |
|
| Q |
312 |
aaaatcattcagatcttttgttcttataaagtcaggaag |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3040 |
aaaatcattcagatcttttgttcttataaagtcaggaag |
3002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 4256245 - 4255935
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4256245 |
tgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttctttcc |
4256146 |
T |
|
| Q |
113 |
aaagattggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatag---agtg |
209 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||||||||| || |||||||||||||||| ||||| || | || || | | |||||||| | | |
|
|
| T |
4256145 |
aaagattggaacctaacgatgccaagtgactatgtggagtttgatttaataatgaaggtaaaggtccaatggtatacaaacaagagaacatagaataata |
4256046 |
T |
|
| Q |
210 |
gagcgcattcagtacatcactctcaagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctacc |
309 |
Q |
| |
|
||| ||||||| |||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
4256045 |
gagagcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggctctatgaaaatgatttgccgcttcaatgaaaaattctacc |
4255946 |
T |
|
| Q |
310 |
ataaaatcatt |
320 |
Q |
| |
|
||| ||||||| |
|
|
| T |
4255945 |
atagaatcatt |
4255935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 4299439 - 4299135
Alignment:
| Q |
16 |
tctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaa |
115 |
Q |
| |
|
|||||||| ||||||| || |||||| ||||||||||||||||| || | || ||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
4299439 |
tctggagtcataactgtaacgctgccaaaattcacataaacaaccgatcccggctccttggattcaagccattcaagacatttggtatcttctttccaaa |
4299340 |
T |
|
| Q |
116 |
gattggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||| | ||||| || ||||||||||| | ||| || |
|
|
| T |
4299339 |
gattggaacctaaagattccaagtgattatgtggagtttgatttaataatgaaggtaaaggtccaatagtatataaagaagggaacatagaatagagagc |
4299240 |
T |
|
| Q |
216 |
attcagtacatcactctcaagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaa |
315 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||||||| | ||||| ||| |||||||| |||||| ||||||||| |||||||||||| | | |
|
|
| T |
4299239 |
attcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaattctaccatgaca |
4299140 |
T |
|
| Q |
316 |
tcatt |
320 |
Q |
| |
|
||||| |
|
|
| T |
4299139 |
tcatt |
4299135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 4259775 - 4259468
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4259775 |
tgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttaaattcaagccattcaagacatttggtatcttctttcc |
4259676 |
T |
|
| Q |
113 |
aaagattggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggag |
212 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||| ||||| ||| ||||| || ||||||||||| | ||| |
|
|
| T |
4259675 |
aaagattggaacctaacgatgccaggtgattatgtggagtttgatttaataatgaaggtaaaggtccaatagcatataaagaagggaacatagaatagag |
4259576 |
T |
|
| Q |
213 |
cgcattcagtacatcactctcaagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccata |
312 |
Q |
| |
|
| |||||| |||||||||||||||||||| ||||||||||||||| | || || ||||| |||| |||||| ||||| |||||||| |||||||| |
|
|
| T |
4259575 |
cacattcattacatcactctcaagttcatcataagtgttaaaaacgatagctgatgctctacaaaatccatctgccgcttccatgaaaaaatctaccatg |
4259476 |
T |
|
| Q |
313 |
aaatcatt |
320 |
Q |
| |
|
| |||||| |
|
|
| T |
4259475 |
acatcatt |
4259468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 4622653 - 4622958
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
|||||| |||| || |||| ||||||||| |||||||| ||||||| || ||||||||||||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
4622653 |
tgatctcgagtcatcactgtaatgctgccaaaattcacgtaaacaagag--tcaggttccttggattcaagccactcaagacacttgatatcttctttcc |
4622750 |
T |
|
| Q |
113 |
aaagattggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggag |
212 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||| ||||| | | || || ||||||||||| || | ||| |
|
|
| T |
4622751 |
aaagattggaacctagagatgccaagtgattatgtggagtttgatttaataatgaaggtaaaggtccaacggtatacaaagatgggaacattgaatagag |
4622850 |
T |
|
| Q |
213 |
cgcattcagtacatcactctcaagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccata |
312 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||| | | ||||| | | |||||||| | ||||| |||||||||| |||||||||||| |
|
|
| T |
4622851 |
cgcattcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaattctaccatg |
4622950 |
T |
|
| Q |
313 |
aaatcatt |
320 |
Q |
| |
|
| |||||| |
|
|
| T |
4622951 |
acatcatt |
4622958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 4626467 - 4626792
Alignment:
| Q |
18 |
tggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaaga |
117 |
Q |
| |
|
|||||| |||||| || |||||| || ||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4626467 |
tggagtcataactataacgctgccaaagttcacataaacaacagactttggttccttgaattcaagccattcaagacaattggtgtcttctttccaaaga |
4626566 |
T |
|
| Q |
118 |
ttggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcat |
217 |
Q |
| |
|
||||||||||||||| ||| || || |||||| || || | || | ||| | || ||||| || | |||| || ||||| |||| | |||||||| |
|
|
| T |
4626567 |
ttggaacctaaagatatcaactggttttgtggacttcgattcaaaagagaatgcaaaggtccaatggtatatacagaaaggaacgtagaatagagcgcat |
4626666 |
T |
|
| Q |
218 |
tcagtacatcactctcaagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaatc |
317 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||| |||||| | || || |||||||||||| |||||| |||||||||| |||||||||||| | ||| |
|
|
| T |
4626667 |
tcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatc |
4626766 |
T |
|
| Q |
318 |
attcagatcttttgttcttataaagt |
343 |
Q |
| |
|
||| ||| | |||| |||||||||| |
|
|
| T |
4626767 |
attaggatttgttgtccttataaagt |
4626792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 4602312 - 4602538
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| || | || ||||||||||| |||||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
4602312 |
ataactgtaatgctgccaaaattcacataaacaacggatcccggctccttggattcaagccattcaagacactcagtatcttctttccagaggttggaac |
4602411 |
T |
|
| Q |
125 |
ctaaagattccaagtgat---tatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcag |
221 |
Q |
| |
|
||||| | ||||| |||| | ||||||||| || ||||||||||| | || ||||||||| | ||||| || ||||||||||| | || ||||||| |
|
|
| T |
4602412 |
ctaaacagtccaattgatgaatttgtggagtttgatttaataatgaatgcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcat |
4602511 |
T |
|
| Q |
222 |
tacatcactctcaagttcattataagt |
248 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
4602512 |
tacatcactctcaagttcattgtaagt |
4602538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 330
Target Start/End: Original strand, 3172273 - 3172569
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | | ||| || | ||| |||||||||||||| || |||||||||||||||||||| ||| |||||||| |
|
|
| T |
3172273 |
atgctgccaaaatttacataaacaacagattttgattcttttgtttcaagccattcaagacatttagtatcttctttccaaagattagaatctaaagatg |
3172372 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctc |
233 |
Q |
| |
|
|||||||||| || ||| || ||||||| || |||| || || || || |||||| || ||||| ||||| || | ||||| ||||||||||| |
|
|
| T |
3172373 |
ccaagtgattttgcggactttgacttaaaaacgaagcgaacggaccaattgtgtatagagaagggaatatagaactaagagtattcataacatcactctc |
3172472 |
T |
|
| Q |
234 |
aagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaatcattcagatctttt |
330 |
Q |
| |
|
|||||||||| ||||||| |||||| | ||||||||| ||||| ||| |||| || ||||||| | |||||||| ||| |||||||| |||||||| |
|
|
| T |
3172473 |
aagttcattagaagtgttgaaaacaatagcagaagctttgtgacatttatctcctacttcaatcataaattctatcatcaaatcattaggatctttt |
3172569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 350
Target Start/End: Complemental strand, 4514721 - 4514405
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
||||| || ||||| |||||||||||||| | | ||| || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4514721 |
atgctaccaaaattaacataaacaacagatcctgattcttttgattcaagccattcaagacatttagtatcttctttccaaagattggaacctaaagatt |
4514622 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctc |
233 |
Q |
| |
|
|||||||||| |||||| || || | || || |||| ||||| || || |||||| || |||| |||||| | || ||||||| ||||||||||| |
|
|
| T |
4514621 |
ccaagtgattttgtggactttgattcaaaaacgaagcaaatgggccaatggtgtatagagaagggagcatagaataaagagcattcataacatcactctc |
4514522 |
T |
|
| Q |
234 |
aagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaatcattcagatcttttgtt |
333 |
Q |
| |
|
||| |||||| |||| || |||| | | ||||||||||| |||| | |||| | ||||| || |||||||| ||| |||||||| |||| |||| |
|
|
| T |
4514521 |
aagatcattagaagtatttaaaaaaatagcagaagctctatgaagtctatctaccatttcaaagataaattctaacatcaaatcattagcatctgttgtc |
4514422 |
T |
|
| Q |
334 |
cttataaagtcaggaag |
350 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
4514421 |
cgtataaaatcaggaag |
4514405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 4564234 - 4564385
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||| || | || ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4564234 |
ataactgtaatgcttccaaaattcacataaacaacggatcccggctccttggattcaagccattcaagacacttagtatcttctttccaaaggttggaac |
4564333 |
T |
|
| Q |
125 |
ctaaagattccaagtgat---tatgtggagttggacttaataatgaaggtaa |
173 |
Q |
| |
|
||||||| ||||| |||| | ||||||||| | |||||||||||||||| |
|
|
| T |
4564334 |
ctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaa |
4564385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 4266775 - 4266559
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
4266775 |
ataactgtgatgctaccaaaatttacataaacaacagatcttggttcttttgattcaagccactcaagacatttagtatcttctttccaaagattggaat |
4266676 |
T |
|
| Q |
125 |
ctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtac |
224 |
Q |
| |
|
||||||| |||||||||| |||||| || || |||| || |||| ||||| || || |||||| || ||||||||||||| ||| ||||||| || |
|
|
| T |
4266675 |
ttaaagatgccaagtgattttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataac |
4266576 |
T |
|
| Q |
225 |
atcactctcaagttcat |
241 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4266575 |
atcactctcaagttcat |
4266559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 4613318 - 4613191
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
||||| || ||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||| | |
|
|
| T |
4613318 |
atgctcccaaaattcacataaacaacggacttcggttccttggattcaagccaatcaagacacttggtatcttctttccaaagattggtacttaaacttg |
4613219 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaa |
161 |
Q |
| |
|
|||||||||| |||||| || ||||||| |
|
|
| T |
4613218 |
ccaagtgattttgtggactttgacttaa |
4613191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 4617545 - 4617696
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || | || ||||||||||| ||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4617545 |
ataactgtaatgctgccgaaattcacataaacaactgatcccggctccttggattcaagccaatcaagacactctgtatcttctttccaaaggttggaat |
4617644 |
T |
|
| Q |
125 |
ctaaagattccaagtgat---tatgtggagttggacttaataatgaaggtaa |
173 |
Q |
| |
|
||||||| ||||| |||| | ||||||||| | |||||||||||||||| |
|
|
| T |
4617645 |
ctaaagagtccaattgatgaatttgtggagtttgttttaataatgaaggtaa |
4617696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 4598703 - 4598806
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4598703 |
atgctcccaaaattcacataaacaacagaccttggttcattggattcaagccagtcaagacacttggtatcttctttccaaagattggtacctaaagatg |
4598802 |
T |
|
| Q |
134 |
ccaa |
137 |
Q |
| |
|
|||| |
|
|
| T |
4598803 |
ccaa |
4598806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 4557648 - 4557806
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| || |
|
|
| T |
4557648 |
ataactgtcatgctcccaaaattcacataaacaacggacctcggttccttggattcaagccaaccaagacacttgttatcttctttccaaagattggtac |
4557747 |
T |
|
| Q |
125 |
ctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgata |
183 |
Q |
| |
|
|||| | ||||||||||||||||| || ||||||| | ||||| ||| || |||||| |
|
|
| T |
4557748 |
ttaaacttgccaagtgattatgtggactttgacttaaaagtgaagataaagggccgata |
4557806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 4561036 - 4561250
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | ||||| || ||||| |||||||||||||| || |||||||||||||||||||| | |||||||| |
|
|
| T |
4561036 |
atgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattacagtctaaagatg |
4561135 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctc |
233 |
Q |
| |
|
||||||||| |||||| || || ||| || |||| |||||| || || |||||| || ||||||||||| | || ||||||| ||||||||||| |
|
|
| T |
4561136 |
tcaagtgattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctc |
4561235 |
T |
|
| Q |
234 |
aagttcattataagt |
248 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
4561236 |
aagttcattagaagt |
4561250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 4458118 - 4458334
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||| || ||||| ||||||| |||||||| ||||| || ||||| ||||| |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
4458118 |
ataactgtgatgcttccaaaatttacataaataacagactttggttcttttgattcaagccactcaagacatttagtatattctttccaaagattggaat |
4458217 |
T |
|
| Q |
125 |
ctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtac |
224 |
Q |
| |
|
||||||| |||||||||| |||||| || || ||| || |||| ||||| || || |||||| || ||||||||||||| ||| | ||||| || |
|
|
| T |
4458218 |
ttaaagatgccaagtgattttgtggactttgatttataaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagtattcataac |
4458317 |
T |
|
| Q |
225 |
atcactctcaagttcat |
241 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4458318 |
atcactctcaagttcat |
4458334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 34 - 350
Target Start/End: Original strand, 4506389 - 4506705
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
||||| || |||||||||||||||||||| | ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| ||| |||||| | |
|
|
| T |
4506389 |
atgcttccaaaattcacataaacaacagaagccggttcttttgattccagccattcgagacatttagtatcctctttccaaagatttgaatctaaagttg |
4506488 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctc |
233 |
Q |
| |
|
| || ||||| |||||| || || ||| ||||||| ||| || || ||| |||||| || || |||||| | || |||||||| |||| |||||| |
|
|
| T |
4506489 |
caaactgattttgtggactttgatttacaaatgaagttaaagggccaatagtgtatagagaaggaaacataatatcaagagcattcagaacattactctc |
4506588 |
T |
|
| Q |
234 |
aagttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaatcattcagatcttttgtt |
333 |
Q |
| |
|
|||||||||| |||| || | |||| | | ||| ||||| |||||| |||||||||||||| | |||||||| | | ||||| || ||||| |||| |
|
|
| T |
4506589 |
aagttcattagaagtattgagaacaatagaagaggctctatgaaatgtttctgctgcttcaataataaattctatcctcaaatcgttaggatctgttgtc |
4506688 |
T |
|
| Q |
334 |
cttataaagtcaggaag |
350 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
4506689 |
cttataaaatcaggaag |
4506705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 4461634 - 4461771
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
||||| ||||| ||||||| |||||||| ||||| ||||| |||||||| | ||||| || ||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
4461634 |
tgatcaggagtcataactgtgatgctgccaaaatttacatagacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttcc |
4461733 |
T |
|
| Q |
113 |
aaagattggaacctaaagattccaagtgattatgtgga |
150 |
Q |
| |
|
||||||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
4461734 |
aaagattggaatttaaagatgccaggtgattttgtgga |
4461771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 4481225 - 4481432
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | ||||| || ||||| |||||||||||||| || |||||||||||||||||||| || |||| | || |
|
|
| T |
4481225 |
atgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaatgttt |
4481324 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctc |
233 |
Q |
| |
|
||||||||| |||||| || || |||| || |||| ||||| || || |||||| || ||||| ||||| | ||| | ||||| ||||||||||| |
|
|
| T |
4481325 |
ccaagtgatattgtggactttgatttaaaaaagaagccaatggaccaatggtgtatagagaagggaatatagaatagagagaattcataacatcactctc |
4481424 |
T |
|
| Q |
234 |
aagttcat |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
4481425 |
aagttcat |
4481432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 4571513 - 4571631
Alignment:
| Q |
43 |
aaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagattccaagtgat |
142 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||| || |||| | ||||||||| |
|
|
| T |
4571513 |
aaattcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttgttatcttctttccaaagattggtacttaaacttgccaagtgat |
4571612 |
T |
|
| Q |
143 |
tatgtggagttggacttaa |
161 |
Q |
| |
|
| |||||| || ||||||| |
|
|
| T |
4571613 |
tctgtggactttgacttaa |
4571631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 4574840 - 4575054
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| || ||||| | |||||||||||| || |||||||||||||||||||| || |||||||| |
|
|
| T |
4574840 |
atgctgccaaaatttacataaacaacagatcttggttcttttgattcaatccattcaagacatttagtatcttctttccaaagattagagtctaaagatg |
4574939 |
T |
|
| Q |
134 |
ccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctc |
233 |
Q |
| |
|
||||| ||| |||||| || || ||| || |||| |||||| || || |||||| || ||||||||||| | || ||||||| ||||||||||| |
|
|
| T |
4574940 |
tcaagtcattttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctc |
4575039 |
T |
|
| Q |
234 |
aagttcattataagt |
248 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
4575040 |
aagttcattagaagt |
4575054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 4579973 - 4580051
Alignment:
| Q |
43 |
aaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattgg |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
4579973 |
aaattcacataaacaacagacctaggttccttggattcaagccaataaagacacttggtatcttctttccaaaaattgg |
4580051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 4592754 - 4592974
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| || | | |||||| ||||| ||||||| |||||||| |||||||||||||| | ||||||| |
|
|
| T |
4592754 |
ataactgtaaggctgccgaaattcacataaacaacggaacccgattccttcgattcaagccatttaagacactcagtatcttctttccatatgttggaac |
4592853 |
T |
|
| Q |
125 |
ctaaagattccaagtgat---tatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcag |
221 |
Q |
| |
|
| ||||| ||||| |||| | ||||||||| | |||||||||||||||| || || || ||| | || || ||||||||| ||| ||||| | |
|
|
| T |
4592854 |
caaaagaatccaattgatggatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttat |
4592953 |
T |
|
| Q |
222 |
tacatcactctcaagttcatt |
242 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4592954 |
tacatcactctcaagttcatt |
4592974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 4489955 - 4489846
Alignment:
| Q |
34 |
atgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagatt |
133 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | ||||| || ||||| |||||||||||||| || |||||||||||||||||||| || ||||||||| |
|
|
| T |
4489955 |
atgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttctttccaaagattagagtctaaagatt |
4489856 |
T |
|
| Q |
134 |
ccaagtgatt |
143 |
Q |
| |
|
||||||||| |
|
|
| T |
4489855 |
tcaagtgatt |
4489846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 4586177 - 4586301
Alignment:
| Q |
43 |
aaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagattccaagtgat |
142 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| | || ||||||| | ||||| | |
|
|
| T |
4586177 |
aaattcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttggtatcctctttccaaagatttgtacttaaagatgctaagtggt |
4586276 |
T |
|
| Q |
143 |
tatgtggagttggacttaataatga |
167 |
Q |
| |
|
| |||||| || || |||| ||||| |
|
|
| T |
4586277 |
tttgtggactttgatttaaaaatga |
4586301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 4504006 - 4503881
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||||||| | ||||| || |||| ||||| |||||||| || |||||||||||||||||||| || |
|
|
| T |
4504006 |
ataactgtaatgctgccaaaatttacataaacaacagatcctggttcttttaattcaagccaatcaagacatttagtatcttctttccaaagattagagt |
4503907 |
T |
|
| Q |
125 |
ctaaagattccaagtgattatgtgga |
150 |
Q |
| |
|
|||||||| ||||| ||| |||||| |
|
|
| T |
4503906 |
ctaaagatgtcaagtcattttgtgga |
4503881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 272
Target Start/End: Original strand, 4470337 - 4470573
Alignment:
| Q |
36 |
gctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagattcc |
135 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||||| || ||||| ||||| |||||||| || ||||||||||||||||||||| || ||||||| | |
|
|
| T |
4470337 |
gctgccgaaatttacatagacaacagatcctggttcttttgattcaagccactcaagacatttagtatcttctttccaaagattgaaatttaaagatgct |
4470436 |
T |
|
| Q |
136 |
aagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctcaa |
235 |
Q |
| |
|
| ||||| |||||| || || |||| || |||| | ||| || || ||||| || ||||| ||||| | ||| |||||| |||||||| |||| |
|
|
| T |
4470437 |
agatgattttgtggactttgatttaaaaaagaagaaagtggaccaatggcgtatagagaagggaatatagaatagagttcattcataacatcactttcaa |
4470536 |
T |
|
| Q |
236 |
gttcattataagtgttaaaaacagttgcagaagctct |
272 |
Q |
| |
|
|||||||| |||| || |||||| | ||||||||||| |
|
|
| T |
4470537 |
gttcattagaagtattcaaaacaatagcagaagctct |
4470573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 4516832 - 4516946
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
||||||||||| || || | ||||| || |||||||||||||| ||||| | ||||||| ||||| |||||||||||||| || |||||||||||| |
|
|
| T |
4516832 |
tgatctggagtcatgaccgtgatgcttccaaaattcacataaactacagaaccttgttccttagattcaagccattcaagacatttcatatcttctttcc |
4516931 |
T |
|
| Q |
113 |
aaagattggaaccta |
127 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
4516932 |
aaagattagaaccta |
4516946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 4835567 - 4835512
Alignment:
| Q |
82 |
agccattcaagacacttggtatcttctttccaaagattggaacctaaagattccaa |
137 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
4835567 |
agccattcaagacattttgtatcttccttccaaagatcggaacctaaagatgccaa |
4835512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 4568628 - 4568682
Alignment:
| Q |
86 |
attcaagacacttggtatcttctttccaaagattggaacctaaagattccaagtg |
140 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4568628 |
attcaagacatttcatatcttctttccaaagattggaacctaaagaagccaagtg |
4568682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 4568764 - 4568800
Alignment:
| Q |
222 |
tacatcactctcaagttcattataagtgttaaaaaca |
258 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4568764 |
tacatcactctcaagttcattataagtattgaaaaca |
4568800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 3086938 - 3087172
Alignment:
| Q |
20 |
gagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagatt |
119 |
Q |
| |
|
|||| ||||||| ||||||||| ||| |||||||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3086938 |
gagtcataactgtaatgctgccaaaactcacataaacaacagactcaagtccctttgattcaagccattcaagacacttggtatcttctttccaaagatt |
3087037 |
T |
|
| Q |
120 |
ggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattc |
219 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| || ||| || ||||||||||||||| || | |||||||| ||||||| ||| | ||||||||| |
|
|
| T |
3087038 |
ggaacctaaagatgccaagtgattatgtgaagtttgatttagtagtgaaggtaatggtccaatggtatataatgaagggaacacagaatatagcgcattc |
3087137 |
T |
|
| Q |
220 |
agtacatcactctcaagttcattataagtgttaaa |
254 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| |
|
|
| T |
3087138 |
attacatcactctcaagttcatcataagtgttaaa |
3087172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 4307 - 4065
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
||||||||||| ||||||| |||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
4307 |
tgatctggagtcataactgtaatgcttccaaaattcacataaacaaccgactcaggttccttggatgcaagccactcaagacacttggtatcttctttcc |
4208 |
T |
|
| Q |
113 |
aaagattggaacctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggag |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||| ||||| || | ||||| || ||||||||||| | ||| |
|
|
| T |
4207 |
aaagattggaacctaaagatt---agtgattatgtggagtttgatttaataatgaagttaaaggtccaatggtatataaagaagggaacatagaatagag |
4111 |
T |
|
| Q |
213 |
cgcattcagtacatcactctcaagttcattataagtgttaaaaaca |
258 |
Q |
| |
|
||||||| |||| | ||||||||||||| |||||||| |||||| |
|
|
| T |
4110 |
agcattcaatacaccgctctcaagttcatcgtaagtgttgaaaaca |
4065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 1674737 - 1674900
Alignment:
| Q |
13 |
tgatctggagtaataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttcc |
112 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||||||||||| || | ||||| |||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
1674737 |
tgatctggagtcataacaataatgctaccgaaattcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttctttcc |
1674836 |
T |
|
| Q |
113 |
aaagattggaacctaaagattccaagtgat---tatgtggagttggacttaataatgaaggtaa |
173 |
Q |
| |
|
|||| ||||||||||||||||| || |||| | ||||||||| | |||||||||||||||| |
|
|
| T |
1674837 |
aaaggttggaacctaaagattctaattgatgaatttgtggagtttggtttaataatgaaggtaa |
1674900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 16685885 - 16685740
Alignment:
| Q |
16 |
tctggagtaataactgcaatgctgccgaaattcacataaacaacaga-ctcaggttccttggattcgagccattcaagacacttggtatcttctttccaa |
114 |
Q |
| |
|
|||| ||| ||||||| ||||| || ||||||||||||||||| || ||| |||||||||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
16685885 |
tctgcagtcataactgtcatgctcccaaaattcacataaacaacggaactc-ggttccttggattcaagccaatcaagacacttggtatcttatttccaa |
16685787 |
T |
|
| Q |
115 |
agattggaacctaaagattccaagtgattatgtggagttggacttaa |
161 |
Q |
| |
|
|||||| || |||| | ||| |||||||||||| || ||||||| |
|
|
| T |
16685786 |
agattgatacttaaacttgacaactgattatgtggactttgacttaa |
16685740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 307
Target Start/End: Complemental strand, 20863440 - 20863170
Alignment:
| Q |
37 |
ctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagattcca |
136 |
Q |
| |
|
||||| ||||| ||||| |||| ||| | ||||| || ||||| |||||| ||||||| | || ||||||||||||||| | ||| ||||||| ||| |
|
|
| T |
20863440 |
ctgccaaaatttacatatacaatagatcccggttctttcgattcaagccatgcaagacattcagtgtcttctttccaaagacttgaatctaaagacgcca |
20863341 |
T |
|
| Q |
137 |
agtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctcaag |
236 |
Q |
| |
|
||||||| |||||| || || |||| || ||| || || || || |||||| || ||||||||||| | ||| |||||| |||||||||||||| |
|
|
| T |
20863340 |
agtgattctgtggactttgatttaaaaaagaaacaaaagggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaag |
20863241 |
T |
|
| Q |
237 |
ttcattataagtgttaaaaacagttgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattcta |
307 |
Q |
| |
|
||||| |||| || |||||| | ||||| |||||||||||| |||| || ||||||||| |||||||| |
|
|
| T |
20863240 |
ctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattcta |
20863170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 1281628 - 1281788
Alignment:
| Q |
16 |
tctggagtaataactgcaatgctgccgaaattcacataaacaacaga-ctcaggttccttggattcgagccattcaagacacttggtatcttctttccaa |
114 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||||||||||||| ||| |||||||| ||||| ||||||| |||||||| | |||||||||||||| |
|
|
| T |
1281628 |
tctggagtcataactgtaatgcttccgaaattcacataaacaacagatctc-ggttccttcgattcaagccattgaagacactcgatatcttctttccaa |
1281726 |
T |
|
| Q |
115 |
agattggaacctaaagattccaagtgat---tatgtggagttggacttaataatgaaggtaa |
173 |
Q |
| |
|
|| |||||| ||||||| ||||| |||| | ||||||||| | |||||||||||||||| |
|
|
| T |
1281727 |
aggttggaatctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaa |
1281788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 24103522 - 24103738
Alignment:
| Q |
25 |
ataactgcaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaac |
124 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||||| || ||||| || ||||| ||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
24103522 |
ataactgtgatgctaccaaaatttacataaacaactgatcttggttcttttgattcaagccactcaagacatttagtatcttctttccaaagattggaat |
24103621 |
T |
|
| Q |
125 |
ctaaagattccaagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtac |
224 |
Q |
| |
|
||||||| |||||||||| |||||| || || |||| || |||| ||||| || || |||||| || ||||||||||||| ||| ||||||| || |
|
|
| T |
24103622 |
ttaaagatgccaagtgattttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataac |
24103721 |
T |
|
| Q |
225 |
atcactctcaagttcat |
241 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24103722 |
atcactctcaagttcat |
24103738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 24107008 - 24107131
Alignment:
| Q |
135 |
caagtgattatgtggagttggacttaataatgaaggtaatggtccgatattgtataatgatgggaacatagagtggagcgcattcagtacatcactctca |
234 |
Q |
| |
|
||||||||||||| || || || |||||||||||||||| ||||| ||| | ||||| | ||||||||||| | ||||| ||||| ||||||||||||| |
|
|
| T |
24107008 |
caagtgattatgttgaatttgatttaataatgaaggtaaaggtccaatagtatataaaaaagggaacatagaatagagcgtattcattacatcactctca |
24107107 |
T |
|
| Q |
235 |
agttcattataagtgttaaaaaca |
258 |
Q |
| |
|
||||||| ||||| |||||||||| |
|
|
| T |
24107108 |
agttcatcataagcgttaaaaaca |
24107131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 24106971 - 24107008
Alignment:
| Q |
43 |
aaattcacataaacaacagactcaggttccttggattc |
80 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24106971 |
aaattcacataaacaacaaactcaggttccttggattc |
24107008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 1 - 137
Alignment:
| Q |
40 |
ccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttccaaagattggaacctaaagattccaagt |
139 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || | |
|
|
| T |
1 |
ccgaaattcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttctttccaaaggttggaacctaaagattctaatt |
100 |
T |
|
| Q |
140 |
gat---tatgtggagttggacttaataatgaaggtaa |
173 |
Q |
| |
|
||| | ||||||||| | |||||||||||||||| |
|
|
| T |
101 |
gatgaatttgtggagtttggtttaataatgaaggtaa |
137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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