View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15298_low_11 (Length: 356)
Name: NF15298_low_11
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 7760783 - 7761100
Alignment:
| Q |
24 |
ggggcagacttaatactagcagtagaagcaacttggggactcatgtagcgctgataatgaagcattacagcttaaattctttcagcaaaggaagatttgt |
123 |
Q |
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| T |
7760783 |
ggggcagacttaatactagcagtagaagccacttggg-actcatgtagcgctgataatgaagcattacagcttaaattctttcagcaaaggaagatttgt |
7760881 |
T |
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| Q |
124 |
cgttgtccgaggtgagaaaaccaagttatcagaacaagtacaactccatctctgcaatgatttg-ttacagttggttgaagctgaaaacccacaaaacta |
222 |
Q |
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| T |
7760882 |
cgttgtccgaggtgagaaaaccaagttatcacaacaagtacaactccatctctgcaatgatttggttacagttggttgaagctgaaaacccacaaaacta |
7760981 |
T |
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| Q |
223 |
ttagttagagctgtcgaactctatcgaacaagagttagggcgggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaatgtcaaataag |
322 |
Q |
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| T |
7760982 |
ttagttagagctgtcgaactctatcgaacaagagttagggcgggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaatgtcaaataag |
7761081 |
T |
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| Q |
323 |
ctaaattcttcagagtata |
341 |
Q |
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| T |
7761082 |
ctaaattcttcagagtata |
7761100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 7815791 - 7815838
Alignment:
| Q |
264 |
gggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaa |
311 |
Q |
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| T |
7815791 |
gggaagaatgcttattcacgcgacaagaaattaaatcacaatgcacaa |
7815838 |
T |
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