View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15298_low_12 (Length: 354)
Name: NF15298_low_12
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 38667012 - 38666787
Alignment:
| Q |
12 |
ataatactatttcttttacaaatatttgatcnnnnnnnnnaatgacaacgattaatatgttaattgtcatgtagtannnnnnnnctccttaccataactt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38667012 |
ataatactctttcttttacaaatatttgatctttttttt-aatgacaacgattaatatgttaattgtcatgtagtatttttttcttccttaccataactt |
38666914 |
T |
|
| Q |
112 |
aaatattgcacatttaactttatcaacgctttannnnnnnaactcaaatcagatgaactacttaaccccataaactttaaaccatgtttgcttgttagta |
211 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38666913 |
a--tattgtacatttaactttatcaacgctttattttcttaactcaaatcagatgaactacttaaccccataaactttaaacgatgtttgcttgttagta |
38666816 |
T |
|
| Q |
212 |
attaagcacactttgcaaacaaatgcgtt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38666815 |
attaagcacactttgcaaacaaatgcgtt |
38666787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 38666735 - 38666691
Alignment:
| Q |
290 |
acaaatatttcatatcaacatgtttgctagctagtaactaagcac |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38666735 |
acaaatatttcatatcaacatgtttgctagctagtaactaagcac |
38666691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University