View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15298_low_15 (Length: 267)

Name: NF15298_low_15
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15298_low_15
NF15298_low_15
[»] chr7 (3 HSPs)
chr7 (112-259)||(45087102-45087250)
chr7 (112-205)||(45088179-45088273)
chr7 (112-194)||(45596907-45596990)
[»] scaffold0029 (2 HSPs)
scaffold0029 (112-259)||(71703-71850)
scaffold0029 (112-205)||(70706-70801)
[»] chr8 (4 HSPs)
chr8 (112-259)||(9311058-9311206)
chr8 (112-259)||(14816607-14816754)
chr8 (112-259)||(14828986-14829133)
chr8 (112-205)||(9312103-9312197)
[»] chr1 (10 HSPs)
chr1 (112-258)||(46015731-46015878)
chr1 (112-259)||(33333285-33333433)
chr1 (112-205)||(33332214-33332308)
chr1 (112-205)||(2939717-2939811)
chr1 (153-259)||(2938641-2938750)
chr1 (112-205)||(46014738-46014832)
chr1 (19-54)||(33333492-33333527)
chr1 (146-202)||(47113044-47113100)
chr1 (147-202)||(36143065-36143120)
chr1 (221-249)||(48222304-48222332)
[»] chr4 (5 HSPs)
chr4 (120-259)||(11038622-11038762)
chr4 (112-194)||(51645910-51645992)
chr4 (113-194)||(36219445-36219526)
chr4 (135-205)||(11039659-11039729)
chr4 (125-194)||(51644786-51644856)
[»] chr2 (6 HSPs)
chr2 (112-249)||(13810463-13810601)
chr2 (112-205)||(13809462-13809555)
chr2 (112-181)||(7184918-7184989)
chr2 (177-236)||(7190094-7190153)
chr2 (112-196)||(35738400-35738485)
chr2 (146-202)||(44915998-44916053)
[»] chr6 (5 HSPs)
chr6 (112-187)||(29744818-29744894)
chr6 (112-187)||(29751085-29751161)
chr6 (143-256)||(17971724-17971836)
chr6 (120-182)||(14403733-14403796)
chr6 (120-204)||(14907067-14907152)
[»] chr3 (9 HSPs)
chr3 (112-187)||(27688523-27688599)
chr3 (112-187)||(27695520-27695596)
chr3 (147-259)||(39992367-39992479)
chr3 (114-205)||(39991544-39991635)
chr3 (113-187)||(20185758-20185833)
chr3 (167-202)||(32304325-32304360)
chr3 (146-194)||(5348835-5348882)
chr3 (112-205)||(20184485-20184579)
chr3 (113-196)||(43844363-43844447)
[»] scaffold0394 (1 HSPs)
scaffold0394 (112-187)||(14308-14384)
[»] scaffold0194 (1 HSPs)
scaffold0194 (114-194)||(19184-19264)
[»] chr5 (1 HSPs)
chr5 (112-198)||(19718824-19718911)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 45087102 - 45087250
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnn 210  Q
    ||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||         
T  45087102 ggtatcggtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctccgttacatgttttggtcttttccgttaattttattcaaaaa 45087201  T
Q  211 nncattagggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
      | ||||| |||||||||||||||||||||||||||||||||||||||    
T  45087202 aacgttaggatttattttcttcatcttctccatctcaatccttcatctc 45087250  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 45088273 - 45088179
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    |||||| |||||||||||||||||||||| | ||| |||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  45088273 ggtatcagtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctcagttacttgttttggtcctttccgttaattttattc 45088179  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 45596907 - 45596990
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgt 194  Q
    |||||||||||| |  |||||||||||||  |||| |||| ||||||||| |||  |||| |||||||||||||||||||||||    
T  45596907 ggtatcggtttgataacataactaaaaaaaagtccgttttggtattttaagtttatctccattacatgttttggtcctttccgt 45596990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 71850 - 71703
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnn 210  Q
    ||||||| ||||||||||||||||||||| | ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  71850 ggtatcgctttggtcccataactaaaaaaaggtccgttgtggtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc-aaaa 71752  T
Q  211 nncattagggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
      | |||||||||||||||||||||||||||||||||||||||||||||    
T  71751 aacgttagggtttattttcttcatcttctccatctcaatccttcatctc 71703  T

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Target: scaffold0029; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 70706 - 70801
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat--gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  70706 ggtatcggtttggtcccataactaaaaaaaaagtccattttggtattttaacttttactccgttacatgttttggtcctttccgttaattttattc 70801  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 9311058 - 9311206
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnn 210  Q
    ||||||| |||||||||||||||||||||  |||  |||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||         
T  9311058 ggtatcgctttggtcccataactaaaaaaaagtctgttttggtattttaacttttgttccgtttcttgttttggtcctttccgttaattttattcaaaaa 9311157  T
Q  211 nncattagggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
      | ||||||||||| |||||||||||||||||||||||||||||||||    
T  9311158 aacgttagggtttatattcttcatcttctccatctcaatccttcatctc 9311206  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 14816607 - 14816754
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnnn 211  Q
    ||||||| ||||||||||| ||||||||| |||  |||| ||||||||||||||| |||||| | ||||||||| |||||||||||||||||||          
T  14816607 ggtatcgctttggtcccattactaaaaaaagtctgttttggtattttaacttttgttccgtttcttgttttggttctttccgttaattttattcaaaaaa 14816706  T
Q  212 ncattagggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
     | ||| |||||||||||||||||||||||||||||||||||||||||    
T  14816707 acgttaaggtttattttcttcatcttctccatctcaatccttcatctc 14816754  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 14829133 - 14828986
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnnn 211  Q
    ||||||| ||||||||||| ||||||||| |||  |||| ||||||||||||||| |||||| | ||||||||| |||||||||||||||||||          
T  14829133 ggtatcgctttggtcccattactaaaaaaagtctgttttggtattttaacttttgttccgtttcttgttttggttctttccgttaattttattcaaaaaa 14829034  T
Q  212 ncattagggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
     | ||| |||||||||||||||||||||||||||||||||||||||||    
T  14829033 acgttaaggtttattttcttcatcttctccatctcaatccttcatctc 14828986  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 9312197 - 9312103
Alignment:
Q  112 ggtatcggtttggtcccataactaa-aaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    ||||||| |||| |||||||||||| |||| |||| |||| ||||||||| |||||||| || ||||||||| |||||||| |||||| ||||||    
T  9312197 ggtatcgctttgatcccataactaaaaaaaagtccgttttggtattttaatttttgctctgtcacatgttttagtcctttctgttaatattattc 9312103  T

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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 46015878 - 46015731
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnn 210  Q
    ||||||| |||||||||||||||||||||  |||| |||| ||||||||||||||| |||||| | |||||| ||||||||||||||||||||||         
T  46015878 ggtatcgctttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgtttcttgttttagtcctttccgttaattttattcaaaaa 46015779  T
Q  211 nncattagggtttattttcttcatcttctccatctcaatccttcatct 258  Q
      | ||||||||||||||||||||| ||||||||||||||||||||||    
T  46015778 aacgttagggtttattttcttcatcctctccatctcaatccttcatct 46015731  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 33333433 - 33333285
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaa-tgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnn 210  Q
    |||||| |||||||||||||| ||||||| ||||| |||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||          
T  33333433 ggtatcagtttggtcccataattaaaaaaatgtccgttttggtattttaatttttgctccgttacatcttttggtcatttccgttaattttattaaaaaa 33333334  T
Q  211 nncattagggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
      | ||| ||||||||||||||||||| |||||||||||||||||||||    
T  33333333 aacgttaaggtttattttcttcatcttttccatctcaatccttcatctc 33333285  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 33332214 - 33332308
Alignment:
Q  112 ggtatcggtttggtcccataactaaaa-aatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    ||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  33332214 ggtatcggtttggtcccataactaaaaaaatgtccgttttgatattttaacttttgctccgttacttgttttggtcatttccgttaattttattc 33332308  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 2939811 - 2939717
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaa-tgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    |||||||||||||||| |||||||||||| ||||  |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  2939811 ggtatcggtttggtcctataactaaaaaaatgtctgttttggtattttaacttttgctccgttacttgttttggtcatttccgttaattttattc 2939717  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 2938641 - 2938750
Alignment:
Q  153 tattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnnnnca---ttagggtttattttcttcatcttctccatctcaat 249  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||        |   |||||||||||||||||||||||||||||||||||    
T  2938641 tattttaatttttgctccgttacatgttttgatcatttccgttaattttattcaaaaaaaaaacgttagggtttattttcttcatcttctccatctcaat 2938740  T
Q  250 ccttcatctc 259  Q
    ||||||||||    
T  2938741 ccttcatctc 2938750  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 46014738 - 46014832
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    ||||||| || | ||||||||||||||||  |||  |||| |||||||||||||||||| || ||||||||| ||||||||||||||| ||||||    
T  46014738 ggtatcgcttcgatcccataactaaaaaaaagtctgttttggtattttaacttttgctctgtcacatgttttagtcctttccgttaatattattc 46014832  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 33333527 - 33333492
Alignment:
Q  19 ctatgacatctcaacgctattaactttgagtgtttt 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  33333527 ctatgacatctcaacgctattaactttgagtgtttt 33333492  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 47113100 - 47113044
Alignment:
Q  146 atttttgtattttaacttttgctccgttacatgttttggtcctttccgttaatttta 202  Q
    ||||| ||| |||| ||||  ||||||||||||||||||||| ||||||||||||||    
T  47113100 attttggtactttatctttatctccgttacatgttttggtcccttccgttaatttta 47113044  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 36143120 - 36143065
Alignment:
Q  147 tttttgtattttaacttttgctccgttacatgttttggtcctttccgttaatttta 202  Q
    |||| |||||||| ||||  ||||||||||||||||||||| |||||||| |||||    
T  36143120 ttttggtattttatctttatctccgttacatgttttggtccattccgttagtttta 36143065  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 48222332 - 48222304
Alignment:
Q  221 tttattttcttcatcttctccatctcaat 249  Q
    |||||||||||||||||||||||||||||    
T  48222332 tttattttcttcatcttctccatctcaat 48222304  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 11038622 - 11038762
Alignment:
Q  120 tttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnnnncattag 218  Q
    |||||||||||||||||||||  |||  |||| ||||||||||||||| || ||| | |||||||||||||||||||||||||||||       | ||||    
T  11038622 tttggtcccataactaaaaaaaagtctgttttggtattttaacttttgttctgtttcttgttttggtcctttccgttaattttattcaaaaaaacgttag 11038721  T
Q  219 ggtttattttcttcatcttctccatctcaatccttcatctc 259  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11038722 ggtttattttcttcatcttctccatctcaatccttcatctc 11038762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 51645992 - 51645910
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgt 194  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||||| |||  ||||||||||||||||||||||||||||    
T  51645992 ggtatcggtttggtcccataactaaaaaaagtccgttttggtattttaagtttatctccgttacatgttttggtcctttccgt 51645910  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 36219445 - 36219526
Alignment:
Q  113 gtatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgt 194  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||||| |||  ||||||||||| |||||||| |||||||    
T  36219445 gtatcggtttggtcccataactaaaaaaagtccgttttagtattttaagtttatctccgttacatattttggtcatttccgt 36219526  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 11039729 - 11039659
Alignment:
Q  135 aaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||    
T  11039729 aaaaaaagtccattttggtattttaacttttgctccgtcacatgttttagtcatttccgttaatattattc 11039659  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 51644786 - 51644856
Alignment:
Q  125 tcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgt 194  Q
    ||||||||||||||||   ||| |||| ||||||||| |||  || |||||||||||||||||||||||||    
T  51644786 tcccataactaaaaaaaaatccgttttggtattttaagtttatcttcgttacatgttttggtcctttccgt 51644856  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 13810601 - 13810463
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnn 210  Q
    ||||||| |||||||||||||||||||||  ||||  ||| ||||||||||||||| || ||| | |||||||||| |||| |||||||||||||         
T  13810601 ggtatcgctttggtcccataactaaaaaaaagtccgatttggtattttaacttttgttctgtttcttgttttggtcatttctgttaattttattcaaaaa 13810502  T
Q  211 nncattagggtttattttcttcatcttctccatctcaat 249  Q
      | |||||||||||||||||||||||||||||||||||    
T  13810501 aacgttagggtttattttcttcatcttctccatctcaat 13810463  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 13809462 - 13809555
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    ||||||| |||| ||| |||| ||||||| |||| |||| ||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||    
T  13809462 ggtatcgctttgatcctataattaaaaaaagtccgttttagtattttaacttttgttccgtcacatgttttagtcctttccgttaatattattc 13809555  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 7184918 - 7184989
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat--gtccatttttgtattttaacttttgctccgttacatgttt 181  Q
    |||||||||||| ||||||||||||||||   |||| |||| |||||||||||||| ||||||||| |||||    
T  7184918 ggtatcggtttgatcccataactaaaaaaaaggtccgttttggtattttaacttttactccgttacttgttt 7184989  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 7190094 - 7190153
Alignment:
Q  177 tgttttggtcctttccgttaattttattcnnnnnnncattagggtttattttcttcatct 236  Q
    |||||||||||||||||||||||||||||       | |||| |||||||||||||||||    
T  7190094 tgttttggtcctttccgttaattttattcaaaaaaacgttagcgtttattttcttcatct 7190153  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 35738400 - 35738485
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgtta 196  Q
    ||||||| |||||| ||||| ||||||  || |||||||| |||||||||||||  ||  ||||||| |||||||| |||||||||    
T  35738400 ggtatcgctttggttccatatctaaaatttgatccattttggtattttaactttatctttgttacatattttggtcatttccgtta 35738485  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 44916053 - 44915998
Alignment:
Q  146 atttttgtattttaacttttgctccgttacatgttttggtcctttccgttaatttta 202  Q
    ||||| |||| ||||||| | ||||||||||| |||||||||||||||||| |||||    
T  44916053 attttggtatcttaacttct-ctccgttacatattttggtcctttccgttagtttta 44915998  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 29744818 - 29744894
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcc 187  Q
    |||||||||||||||||||||||||||||  |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  29744818 ggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgttacatgttttggtcc 29744894  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 29751161 - 29751085
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcc 187  Q
    |||||||||||||||||||||||||||||  |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  29751161 ggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgttacatgttttggtcc 29751085  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 17971836 - 17971724
Alignment:
Q  143 tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnnnncattagggtttattttcttcatcttctcca 242  Q
    |||||||| ||||||||| |||  ||||||| ||  |||||||||||||||||||||||||||         ||| ||||| |||||||||| |||||||    
T  17971836 tccattttggtattttaagtttatctccgttgcacattttggtcctttccgttaattttattccaaaaaaagttacggttt-ttttcttcatgttctcca 17971738  T
Q  243 tctcaatccttcat 256  Q
    ||||||||||||||    
T  17971737 tctcaatccttcat 17971724  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 14403733 - 14403796
Alignment:
Q  120 tttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgtttt 182  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||| ||||||||||||||    
T  14403733 tttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttacatgtttt 14403796  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 14907067 - 14907152
Alignment:
Q  120 tttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttatt 204  Q
    ||||||||| ||| ||||||| | ||| |||| |||||| ||||||  |||||||||| |||||| || |||||||||||||||||    
T  14907067 tttggtcccctaattaaaaaaagatccgttttggtatttaaactttatctccgttacacgttttgatcatttccgttaattttatt 14907152  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 27688523 - 27688599
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcc 187  Q
    |||||||||||||||||||||||||||||  |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  27688523 ggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgttacatgttttggtcc 27688599  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 27695596 - 27695520
Alignment:
Q  112 ggtatcggtttggtcccataact-aaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcc 187  Q
    ||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  27695596 ggtatcggtttggtcccataactgaaaaaaagtccgttttggtattttaacttttgttccgttacatgttttggtcc 27695520  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 39992479 - 39992367
Alignment:
Q  147 tttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattcnnnnnnncattagggtttattttcttcatcttctccatctc 246  Q
    |||| ||||||||| ||||  || ||| | |||||||||| |||||||||||||||||        | ||||||||||||||||||||||||||||||||    
T  39992479 ttttggtattttaatttttattctgtttcttgttttggtcatttccgttaattttattaaaaaaaacgttagggtttattttcttcatcttctccatctc 39992380  T
Q  247 aatccttcatctc 259  Q
    |||||||||||||    
T  39992379 aatccttcatctc 39992367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 39991544 - 39991635
Alignment:
Q  114 tatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    ||||| |||| ||||||||||||||||  ||| |||| ||||||||||||||||||| | ||||||||| ||||||| ||||||| ||||||    
T  39991544 tatcgttttgatcccataactaaaaaaaatccgttttggtattttaacttttgctccatcacatgttttagtccttttcgttaatattattc 39991635  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 20185833 - 20185758
Alignment:
Q  113 gtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcc 187  Q
    ||||||||||| ||||||||||||||||  ||   |||| ||||||||||||||| ||||||||||||||||||||    
T  20185833 gtatcggtttgatcccataactaaaaaaaagtttgttttggtattttaacttttgttccgttacatgttttggtcc 20185758  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 32304325 - 32304360
Alignment:
Q  167 ctccgttacatgttttggtcctttccgttaatttta 202  Q
    ||||||||||||||||||||||||||||||||||||    
T  32304325 ctccgttacatgttttggtcctttccgttaatttta 32304360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 5348882 - 5348835
Alignment:
Q  146 atttttgtattttaacttttgctccgttacatgttttggtcctttccgt 194  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  5348882 attttggtattttaactttt-ctccgttacatattttggtcctttccgt 5348835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 20184485 - 20184579
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaa-atgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaattttattc 205  Q
    |||||||||||||||||||||||||||| |  ||| |||| |||||||||||||   | |  ||||  |||| ||||||||||||||||| ||||    
T  20184485 ggtatcggtttggtcccataactaaaaataaatccgttttggtattttaactttattttcagtacacattttagtcctttccgttaatttaattc 20184579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 43844447 - 43844363
Alignment:
Q  113 gtatcggtttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgtta 196  Q
    |||||||||||||||| |||||||||| || |  ||||||||  ||||| |||  ||||||||||  |||||||| |||||||||    
T  43844447 gtatcggtttggtcccctaactaaaaattgatttatttttgtcctttaaatttctctccgttacacattttggtcatttccgtta 43844363  T

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Target: scaffold0394 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 14308 - 14384
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaat-gtccatttttgtattttaacttttgctccgttacatgttttggtcc 187  Q
    |||||||||||||||||||||||||||||  |||| |||| ||||||||||||||| ||||||||||||||| ||||    
T  14308 ggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgttacatgttttagtcc 14384  T

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Target: scaffold0194 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 19264 - 19184
Alignment:
Q  114 tatcggtttggtcccataactaaaaaatgtccatttttgtattttaacttttgctccgttacatgttttggtcctttccgt 194  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||| |||  ||| || | |||||||| ||||||||||    
T  19264 tatcggtttggtcccataactaaaaaaagtccgttttggtattttaagtttatctctgtgatatgttttgatcctttccgt 19184  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 19718911 - 19718824
Alignment:
Q  112 ggtatcggtttggtcccataactaaaaaatg-tccatttttgtattttaacttttgctccgttacatgttttggtcctttccgttaat 198  Q
    ||||||| |||| ||| ||||||||||||   ||| |||| ||||||||||||||  ||||| ||||||||| |||||||||||||||    
T  19718911 ggtatcgctttgatcctataactaaaaaaaaatccgttttggtattttaacttttattccgtcacatgttttagtcctttccgttaat 19718824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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