View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15298_low_5 (Length: 441)
Name: NF15298_low_5
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_low_5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 66 - 441
Target Start/End: Original strand, 42804853 - 42805228
Alignment:
| Q |
66 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
165 |
Q |
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| T |
42804853 |
atataagtttattgccatttttcactaactgtcgcatataatttcaacatgaaagaacatgagaggatctattctcattgaagttaagttatgctttctt |
42804952 |
T |
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| Q |
166 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaatctatcctgcattcataagatgccctgtcatgaatagcactatt |
265 |
Q |
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| T |
42804953 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
42805052 |
T |
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| Q |
266 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
365 |
Q |
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| T |
42805053 |
tattcacaacgcatttgtttataatttttcagtatttcttggaccacaggatatcaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
42805152 |
T |
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| Q |
366 |
gccaaggatttgtgttgatgcctttaccattcattatatatttatatttttaatacatctactagaagtttgatga |
441 |
Q |
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| T |
42805153 |
accaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatga |
42805228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 66 - 441
Target Start/End: Original strand, 42762451 - 42762818
Alignment:
| Q |
66 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
165 |
Q |
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| T |
42762451 |
atataagtttattgccgtttttcactaactgtcacatataattttaacatgaaagagcatgagaggatccattctcattgaagtgaatttatgctttctt |
42762550 |
T |
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| Q |
166 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaatctatcctgcattcataagatgccctgtcatgaatagcactatt |
265 |
Q |
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| T |
42762551 |
ctatgttactttggattgaagttttaatttcatttatgtcgtttttaggggttgaacctatcccgccttcataagatgccctgtcatgaatagcactatt |
42762650 |
T |
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| Q |
266 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
365 |
Q |
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| T |
42762651 |
tattcacaacgtatttgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacaatgaaaatgctgtgtatgtcaact |
42762750 |
T |
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| Q |
366 |
gccaaggatttgtgttgatgcctttaccattcattatatatttatatttttaatacatctactagaagtttgatga |
441 |
Q |
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| T |
42762751 |
gccaaggatttgtgttgatgcccttaccattta--------ttatatttttaatacatctactagaagtttgatga |
42762818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 42761124 - 42761156
Alignment:
| Q |
17 |
atgtatggtaaatgcggggagattggtgatgct |
49 |
Q |
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| T |
42761124 |
atgtatggtaaatgcggtgagattggtgatgct |
42761156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 33048811 - 33048988
Alignment:
| Q |
70 |
aagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctat |
169 |
Q |
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| T |
33048811 |
aagtttattgccgtttttcactaactgtcgcatataattttaaca----------tgagaggatccattctcattgaagttaagttatgctttcttctat |
33048900 |
T |
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| Q |
170 |
gttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaatctatcctgcattcataagatgccctgtcatgaata |
257 |
Q |
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| T |
33048901 |
gttacttaggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
33048988 |
T |
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