View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15298_low_8 (Length: 387)
Name: NF15298_low_8
Description: NF15298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15298_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 46865065 - 46864698
Alignment:
| Q |
9 |
agagccgttggatcaagnnnnnnnntcataactttaattcaactacgggattgaaacctatatcttcatattcttgtctatattcatgacttgttcattc |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46865065 |
agagccgttggatcaagaaaaaaaatcataactttaattcaactatgggattgaaacctatatcttcatattcttgtctatattcatgacttgttcattc |
46864966 |
T |
|
| Q |
109 |
agagacatcgattgaattaagtattaatttaattttcgtcgttcctaacttttattttg-ggagtcgttcctaacttaaacttatcaataattggtggat |
207 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46864965 |
agagacatcgattgaattaggtcttaatttaatttccttcgtttctaacttttttttttcggagtcgttcctaacttaaacttatcaataattggtggat |
46864866 |
T |
|
| Q |
208 |
atgataacgaatacctcttattaagtggttagcattgtttctaagaaagagttgtatgttggatgaaaaaaatcattcttttgccttcacttga----nn |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46864865 |
atgataacgaattcctcttattaagtggttagcattgtttctaagaaagagttgtatgttggatgaaaaaaatcattcttttgccttcacttgatttttt |
46864766 |
T |
|
| Q |
304 |
nnnnnnnnnnnnggggatatacagaagataattgagaaaagacaagtcatagacataatgttaaaaat |
371 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
46864765 |
ttttttttttttggggatatacagaagataattgacaaaagacaagtcatagacatgatgttaaaaat |
46864698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University