View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_16 (Length: 476)

Name: NF15299_high_16
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_16
NF15299_high_16
[»] chr1 (10 HSPs)
chr1 (180-330)||(18280212-18280362)
chr1 (6-181)||(18279789-18279964)
chr1 (180-330)||(8296383-8296533)
chr1 (334-460)||(18280537-18280663)
chr1 (363-460)||(8296046-8296143)
chr1 (102-181)||(8296705-8296784)
chr1 (102-180)||(8300283-8300361)
chr1 (51-89)||(8296829-8296867)
chr1 (51-89)||(8300406-8300444)
chr1 (210-247)||(8300054-8300091)
[»] chr6 (1 HSPs)
chr6 (181-330)||(1144723-1144872)
[»] chr5 (1 HSPs)
chr5 (38-78)||(21120951-21120991)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 18280212 - 18280362
Alignment:
Q  180 gtgaacattgtctttaaatttgcttgaaactttggttttggcttcatttagttcattataacaatcaaattcttctctaacagaccaactgagaaaaatc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  18280212 gtgaacattgtctttaaatttgcttgaaactttggttttggcttcatttagttcattataccaatcaaattcttctctaacggaccaactgagaaaaatc 18280311  T
Q  280 aatgaattgatgatcctcataattcataatttcaattggaagcaaccattt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18280312 aatgaattgatgatcctcataattcataatttcaattggaagcaaccattt 18280362  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 18279789 - 18279964
Alignment:
Q  6 agcagcagagagaggaggcagaattgatgaacaaagaatcctaaatcggttcatcttataaacatgaagtagggttgattttataacagcactgtttctg 105  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18279789 agcagcagaaagaggaggcagaattgatgcgcaaagaatcctaaatcatttcatcttataaacatgaagtagggttggttttataacagcactgtttctg 18279888  T
Q  106 gtttcctgtgcctcaacttcaaggtttgaagtatgtaaaactatgtctgttaaattctgaaaatttcttttgatgt 181  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  18279889 gtttcctgtgcctcaacttcaaagtttgaagtatgcaaaactatgtctgttaaattctgaaaatttctcttgatgt 18279964  T

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Target: chr1; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 180 - 330
Target Start/End: Complemental strand, 8296533 - 8296383
Alignment:
Q  180 gtgaacattgtctttaaatttgcttgaaactttggttttggcttcatttagttcattataacaatcaaattcttctctaacagaccaactgagaaaaatc 279  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||     
T  8296533 gtgaactttgtctttaaatttgcttgaaactttggttttggtttcatttagttcattataacaatcaaattcttctctaacttaccaaatgagaaaaata 8296434  T
Q  280 aatgaattgatgatcctcataattcataatttcaattggaagcaaccattt 330  Q
     |||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  8296433 tatgaattgttgatcctcatgtttcataatttcaattggaagcaaccattt 8296383  T

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Target: chr1; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 334 - 460
Target Start/End: Original strand, 18280537 - 18280663
Alignment:
Q  334 ttagaggatctaaatccatatgcatatatagttgttgaaacttgaaaatgaagaaaacaagttataggtctgatgatgtcgggtatcactttataacata 433  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18280537 ttagaggatccaaatccgtatgcatatatagttgctgaaacttgaacatgaagaaaacaagttataggtctgatgatgtcgggtatcactttataacata 18280636  T
Q  434 cttcaaatgaattactatgactataat 460  Q
    |||||||||||||||||||||||||||    
T  18280637 cttcaaatgaattactatgactataat 18280663  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 460
Target Start/End: Complemental strand, 8296143 - 8296046
Alignment:
Q  363 agttgttgaaacttgaaaatgaagaaaacaagttataggtctgatgatgtcgggtatcactttataacatacttcaaatgaattactatgactataat 460  Q
    |||||||||||||| |||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||    
T  8296143 agttgttgaaactttaaaccgaagaaaacaatttataggtctgatgatgtcgggtatcactttatgacataattaaaatgaattaatatgactataat 8296046  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 8296784 - 8296705
Alignment:
Q  102 tctggtttcctgtgcctcaacttcaaggtttgaagtatgtaaaactatgtctgttaaattctgaaaatttcttttgatgt 181  Q
    |||||||||||||  |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  8296784 tctggtttcctgtcactcatcttcaatgtttgaagtatgtaaaactatgtctgttatattctgaaaatttttcttgatgt 8296705  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 8300361 - 8300283
Alignment:
Q  102 tctggtttcctgtgcctcaacttcaaggtttgaagtatgtaaaactatgtctgttaaattctgaaaatttcttttgatg 180  Q
    |||||||||||||  ||||  ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  8300361 tctggtttcctgtcactcattttcaatgtttgaagtatgtaaaactatgtctgttatattctaaaaatttctcttgatg 8300283  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 8296867 - 8296829
Alignment:
Q  51 tcggttcatcttataaacatgaagtagggttgattttat 89  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8296867 tcggttcatcttataaacatgaagtagggtggtttttat 8296829  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 8300444 - 8300406
Alignment:
Q  51 tcggttcatcttataaacatgaagtagggttgattttat 89  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8300444 tcggttcatcttataaacatgaagtagggtggtttttat 8300406  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 8300091 - 8300054
Alignment:
Q  210 tttggttttggcttcatttagttcattataacaatcaa 247  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  8300091 tttggttttagtttcatttagttcattataacaatcaa 8300054  T

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Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 1144872 - 1144723
Alignment:
Q  181 tgaacattgtctttaaatttgcttgaaactttggttttggcttcatttagttcattataacaatcaaattcttctctaacagaccaactga-gaaaaatc 279  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||  ||||| ||| ||||||||    
T  1144872 tgaactttgcctttaaatttgcttggaactttggttttggcttca-ttagttcatttgaacaatcaaattcttctctcactaaccaaatgaggaaaaatc 1144774  T
Q  280 aatgaattgatgatcctcataattcataatttcaattggaagcaaccattt 330  Q
    |||||||||||||| |||||  ||||| |||| |||| |||| ||||||||    
T  1144773 aatgaattgatgattctcatgtttcatcattttaattagaaggaaccattt 1144723  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 21120951 - 21120991
Alignment:
Q  38 aaagaatcctaaatcggttcatcttataaacatgaagtagg 78  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  21120951 aaagaatcataaattgggtcatcttataaacatgaagtagg 21120991  T

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