View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_17 (Length: 458)

Name: NF15299_high_17
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_17
NF15299_high_17
[»] chr4 (3 HSPs)
chr4 (91-426)||(39881851-39882186)
chr4 (34-71)||(7922258-7922295)
chr4 (27-83)||(39881781-39881835)
[»] chr8 (2 HSPs)
chr8 (295-419)||(22640783-22640913)
chr8 (34-71)||(13286147-13286184)
[»] chr1 (1 HSPs)
chr1 (31-79)||(127087-127135)
[»] chr3 (2 HSPs)
chr3 (41-79)||(2584008-2584046)
chr3 (40-81)||(40575607-40575648)
[»] chr6 (1 HSPs)
chr6 (34-78)||(9333747-9333791)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 91 - 426
Target Start/End: Original strand, 39881851 - 39882186
Alignment:
Q  91 cgtgaaaccaaattcatagaggatagttttagtcatgcttatccttatgcacacctcaccgagacttagtcttagaaaactaacccacttccttcttctt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39881851 cgtgaaaccaaattcatagaggatagttttagtcatgcttatccttatgcacacctcaccgagacttagtcttagaaaactaacccacttccttcttctt 39881950  T
Q  191 ttctaatatcttgcatgactcatcagcaaatgcaacaaccatctatcaggcccttatgctcacaccatctcctcccatattctctcaactttccatttat 290  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39881951 ttctaatatctcgcatgactcatcagcaaatgcaacaaccatctatcaggtccttatgctcacacgatctcctcccatattctctcaactttccatttat 39882050  T
Q  291 attcaaattctcatttacacacgtacaaacacttcacaaactttccaacttcacaaaatcaaactctaccaagaacaaacaaatgaacattctcactcca 390  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39882051 attcaaattctcatttacgcacgtacaaacacttcacaaactttccaacttcacaaaatcaaactctaccaagaacaaacaaatgaacattctcactcca 39882150  T
Q  391 cgttctcatcattcatacatctcattttagtttcat 426  Q
    ||||||||||||||||||||||||||||||||||||    
T  39882151 cgttctcatcattcatacatctcattttagtttcat 39882186  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 7922295 - 7922258
Alignment:
Q  34 tggtaaagacaatgcattatatatgcaagatccgggtt 71  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7922295 tggtaaagacaatgcataatatatgcaagatccgggtt 7922258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 39881781 - 39881835
Alignment:
Q  27 gattaactggtaaagacaatgcattatatatgcaagatccgggtttcaaatcctaat 83  Q
    ||||||| ||||| |||||||| |||||||||||||||||||  |||||||||||||    
T  39881781 gattaaccggtaaggacaatgcgttatatatgcaagatccgg--ttcaaatcctaat 39881835  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 295 - 419
Target Start/End: Complemental strand, 22640913 - 22640783
Alignment:
Q  295 aaattctcatttacacacgtacaaacacttcacaaactttcca------acttcacaaaatcaaactctaccaagaacaaacaaatgaacattctcactc 388  Q
    ||||||||| ||||| || |||||||||||||||||||| |||      |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22640913 aaattctcagttacagacttacaaacacttcacaaacttcccattcccaacttcacaaaatcaaactctaccaagaacaaacaaatgaacactctcactc 22640814  T
Q  389 cacgttctcatcattcatacatctcatttta 419  Q
    ||| ||||  |||||||||||||||||||||    
T  22640813 cactttcttgtcattcatacatctcatttta 22640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 13286147 - 13286184
Alignment:
Q  34 tggtaaagacaatgcattatatatgcaagatccgggtt 71  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  13286147 tggtatagacaatgcataatatatgcaagatccgggtt 13286184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 127087 - 127135
Alignment:
Q  31 aactggtaaagacaatgcattatatatgcaagatccgggtttcaaatcc 79  Q
    ||||||||| |||||||||||||||||||||| |||||| || ||||||    
T  127087 aactggtaaggacaatgcattatatatgcaaggtccggggtttaaatcc 127135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 2584046 - 2584008
Alignment:
Q  41 gacaatgcattatatatgcaagatccgggtttcaaatcc 79  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  2584046 gacaatgcattatatatgcaagatccgaggttcaaatcc 2584008  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 40575648 - 40575607
Alignment:
Q  40 agacaatgcattatatatgcaagatccgggtttcaaatccta 81  Q
    ||||||||||| ||||||||||| |||||| |||||||||||    
T  40575648 agacaatgcataatatatgcaaggtccggggttcaaatccta 40575607  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 9333747 - 9333791
Alignment:
Q  34 tggtaaagacaatgcattatatatgcaagatccgggtttcaaatc 78  Q
    |||||| |||||||||||||||||||||| |||||| || |||||    
T  9333747 tggtaaggacaatgcattatatatgcaaggtccggggtttaaatc 9333791  T

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