View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_19 (Length: 446)
Name: NF15299_high_19
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 33648847 - 33648421
Alignment:
| Q |
1 |
acttaatgcagcagccattgttgaagtgctacttctgttttgaaagccaaaagaaaaagatttcctcatgttattgagttcatcgccgcggatggaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33648847 |
acttaatgcagcagccattgttgaagtgctacttctgttttgaaagccgaaagaaatagatttcctcatgttattgagttcattgccgcggatggaccag |
33648748 |
T |
|
| Q |
101 |
tctaattttccatcaggagagccccaaccagagaaggcagaaggttccatggcaactgagctagcagaaggaagctcggaattaaagctcgccacgctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
33648747 |
tctaattttccatcaggagagccccaaccagagaaggcagaaggttccatggcaactgagctagcagaaggaagctcggaattaaatctcgccatgctgc |
33648648 |
T |
|
| Q |
201 |
tgcactcaataaagctttggctacgcttcgaaaaggcatcaactctaaattgtgatgatccaatcacgtttgaattggtaagatcaaaaggattgcccca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648647 |
tgcactcaataaagctttggctacgcttcgaaaaggcatcaactctaaattgtgatgatccaatcacgtttgaattggtaagatcaaaaggattgcccca |
33648548 |
T |
|
| Q |
301 |
aagttgctggtttgtgctctgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648547 |
aagttgctggtttgtgctctgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagc |
33648448 |
T |
|
| Q |
401 |
ctatttgaaggagatggaagacctgta |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
33648447 |
ctatttgaaggagatggaagacctgta |
33648421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 36224427 - 36224664
Alignment:
| Q |
47 |
ccaaaagaaaaagatttcctcatgttattgagttcatcgccgcggatggaccagtctaattttccatcaggagagccccaaccagagaaggcagaaggtt |
146 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
36224427 |
ccaaaagaataagatttcctcattttattgagttcatcgccgcggatggactagtctaattttccatcaggagagccccaaccagagaaggtagaaggtt |
36224526 |
T |
|
| Q |
147 |
ccatggcaactgagctagcagaaggaagctcggaattaaagctcgccacgctgctgcactcaataaagctttggctacgcttcgaaaaggcatcaactct |
246 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||| ||||||||||||||| || ||||| |||||||||||||||| |
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|
| T |
36224527 |
ccatggcaactgagctagcagaaggaagctcggaattaaggcttgcaacgttgctgcgctcaataaagctttgtctccgctttgaaaaggcatcaactc- |
36224625 |
T |
|
| Q |
247 |
aaattgtgatgatccaatcacgtttgaattggtaagatcaaa |
288 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
36224626 |
---ctgtgatgatccaatcacatttgaattggtaagaccaaa |
36224664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 33649006 - 33648848
Alignment:
| Q |
1 |
acttaatgcagcagccattgttgaagtgctacttctgttttgaaagccaaaagaaaaagatttcctcatgttattgagttcatcgccgcggatggaccag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33649006 |
acttgatgcagcagccattgttgaagtgctacttctgttgcgaaatccgaaagaataagatttcctcattttattgagttcatcgccgcggatggaccag |
33648907 |
T |
|
| Q |
101 |
tctaattttccatcaggagagccccaaccagagaaggcagaaggttccatggcaactga |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
33648906 |
tctaattttccatcaggagagcccgaaccagagaaggcagaaggttccatggcaactga |
33648848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 25819288 - 25818892
Alignment:
| Q |
20 |
gttgaagtgctacttctgttttgaaagccaaaagaaaaagatttcctcatgttattgagttcatcgccgcggatggaccagtctaattttccatcaggag |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| | | |
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|
| T |
25819288 |
gttgaagtgctacttctgtttcgaaagccaaaagaataagatttcctcattttattgagttcatagccgcagatggaccagtctaattttccatcaaggg |
25819189 |
T |
|
| Q |
120 |
agccccaaccagagaaggcagaaggttccatggcaactgagctagcagaaggaagctcggaattaaagctcgccacgctgctgcactcaataaagctttg |
219 |
Q |
| |
|
| |||||||||||||| | |||||| ||||||||||||||| ||| ||| | |||||||||||| || ||| |||||||||||||||| || |
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|
| T |
25819188 |
aaccccaaccagagaaagtagaaggctccatggcaactgaggtag------gaatcaaagaattaaagctcaccctgctattgcactcaataaagctatg |
25819095 |
T |
|
| Q |
220 |
gctacgcttcgaaaaggcatcaactctaaattgtgatgatccaatcacgtttgaattggtaagatcaaaaggattgccccaaagttgctggtttgtgctc |
319 |
Q |
| |
|
||| |||||||||||||||||||| || ||||||| |||||| |||| || ||||||| ||||| | |||||| ||||||||||||||||||| | || |
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|
| T |
25819094 |
gctccgcttcgaaaaggcatcaaccctgaattgtggcgatccactcacattggaattggaaagattagaaggatatccccaaagttgctggtttgcgttc |
25818995 |
T |
|
| Q |
320 |
tgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagcctatttgaaggagatggaa |
419 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
25818994 |
tgatgcacctgcattgaggtcggagaatgtaacactgacccgaaaaagttttcaaggttagtaggattcactcctgcaagcctatttgaaggagattgaa |
25818895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 85 - 422
Target Start/End: Complemental strand, 25813558 - 25813221
Alignment:
| Q |
85 |
gccgcggatggaccagtctaattttccatcaggagagccccaaccagagaaggcagaaggttccatggcaactgagctagcagaaggaagctcggaatta |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| || ||| || |
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|
| T |
25813558 |
gccgcggatggaccagtctaattttccatcaggcgagccccaaccagagaaaatagaaggctccatggcaactgaggtagcagaaggaagatcagaacta |
25813459 |
T |
|
| Q |
185 |
aagctcgccacgctgctgcactcaataaagctttggctacgcttcgaaaaggcatcaactctaaattgtgatgatccaatcacgtttgaattggtaagat |
284 |
Q |
| |
|
|||||||||| ||| ||| ||| |||||||| ||||| |||| || |||||||| ||||| ||||| ||| ||||| || ||| |||||||||||| |
|
|
| T |
25813458 |
aagctcgccatgctagtgcgctcgataaagctctggctttgctttgagaaggcatctactctgaattggagtgagccaataacatttcaattggtaagat |
25813359 |
T |
|
| Q |
285 |
caaaaggattgccccaaagttgctggtttgtgctctgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtagg |
384 |
Q |
| |
|
|| || ||| || ||| ||| ||| ||||| | ||||||||| ||| |||| |||||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
25813358 |
cagaatgatagcaccagagtggctagtttgcgttctgatgcatctgcattgtggtcggagattgtatcgatgacccgaaaaagttttcaaggttagtagg |
25813259 |
T |
|
| Q |
385 |
attcactcctgcaagcctatttgaaggagatggaagac |
422 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
25813258 |
attcactcttgcaagcctatttgaaggggatgaaagac |
25813221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 25822672 - 25822472
Alignment:
| Q |
44 |
aagccaaaagaaaaagatttcctcatgttattgagttcatcgccgcggatggaccagtctaattttccatcaggagagccccaaccagagaaggcag--- |
140 |
Q |
| |
|
||||| |||||| ||||| || |||| | |||||||| ||| ||| |||| ||||| |||| ||||| |||||| ||| |||| |||||||||||| |
|
|
| T |
25822672 |
aagccgaaagaataagatgtcgtcatttcattgagtttatcaccggggatagaccaatctacttttctatcaggggagtgccaatcagagaaggcagtag |
25822573 |
T |
|
| Q |
141 |
aaggttccatggcaactgagctagcagaaggaagctcggaattaaagctcgccacgctgctgcactcaataaagctttggctacgcttcgaaaaggcatc |
240 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| | |||||| ||||| || || ||||||||||| |
|
|
| T |
25822572 |
aaggttctaatgcaactgaggtagcagaaggaagcttggaattaaagcttgccacgctgctgcactcgaaaaagctctggctccgatttgaaaaggcatc |
25822473 |
T |
|
| Q |
241 |
a |
241 |
Q |
| |
|
| |
|
|
| T |
25822472 |
a |
25822472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 25822346 - 25822281
Alignment:
| Q |
343 |
agattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagcctatttga |
408 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
25822346 |
agattgtatcgatgacccaaaaatgtcttcatggttagtaggattcactcctgcaagtctatttga |
25822281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 25816572 - 25816482
Alignment:
| Q |
318 |
tctgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagcctatttga |
408 |
Q |
| |
|
|||||| | |||| |||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25816572 |
tctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagcctacttga |
25816482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 25816816 - 25816673
Alignment:
| Q |
101 |
tctaattttccatcaggagagccccaaccagagaaggcag---aaggttccatggcaactgagctagcagaaggaagctcggaattaaagctcgccacgc |
197 |
Q |
| |
|
|||||||||| |||| |||||| | |||||||||||| || |||| |||| | ||||||| ||||| |||||| ||||||||||||||||| || |
|
|
| T |
25816816 |
tctaattttctatcacgagagcgcaaaccagagaaggaagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgc |
25816717 |
T |
|
| Q |
198 |
tgctgcactcaataaagctttggctacgcttcgaaaaggcatca |
241 |
Q |
| |
|
|||||| ||| |||||| | ||||| ||||||||| ||||||| |
|
|
| T |
25816716 |
tgctgctctcgataaagttctggctctgcttcgaaagggcatca |
25816673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 25813601 - 25813556
Alignment:
| Q |
3 |
ttaatgcagcagccattgttgaagtgctacttctgttttgaaagcc |
48 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25813601 |
ttaatgcataagccattgttgaagtgctacttctgtttcgaaagcc |
25813556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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