View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_20 (Length: 436)
Name: NF15299_high_20
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 47832877 - 47833275
Alignment:
| Q |
16 |
ttactaactattgacactgctacnnnnnnnccttcagtatacgagtattttctgttgctgctatcatttgcaatatattagtgcttccggtgaattacta |
115 |
Q |
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| T |
47832877 |
ttactaactattgatactgctactttttttccttcagtatacgagtattttctgttgctgctatcatttgcaatatattagtgcttccggtgaattacta |
47832976 |
T |
|
| Q |
116 |
tgctgatcacaggatgcatacagacataccttttgagtcactagaagcatttaccatagagaatgttaaggaaggatccagatggtatgcacaatgtctt |
215 |
Q |
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| T |
47832977 |
tgctgatcacaggatgcatacagacataccttttgagtcactagaagcatttaccatagagaatgttaaggaaggatccagatggtatgcacaatgtctt |
47833076 |
T |
|
| Q |
216 |
attttttgtatggaagtgttcatcatatgagtgtagttcaaatagcaaataatgggtagaggctaaggaaataatgaacaaacaatagaatacatagata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47833077 |
attttttgtatggaagtgttcatcatatgagtgtagttcaaatagcaaataatgggtagaggctaaggaaataatgaacaaacaatagaatacatagata |
47833176 |
T |
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| Q |
316 |
aatatgcttatgacacttcatatattgtttgaacaacaaaatatatgtatacatcacataaccgatcagatggtgtatccggagtagtgccaagagata |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47833177 |
aatatgcttatgacacttcatatattgtttgaacaacaaaatatatggatacatcacatatccgatcagatggtgtatccggagtagtgccaagagata |
47833275 |
T |
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