View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_high_21 (Length: 430)
Name: NF15299_high_21
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 149 - 414
Target Start/End: Complemental strand, 29229978 - 29229712
Alignment:
| Q |
149 |
atcatgtaacaaacttgtgattggaaggtgggaattttaaaacctcctctccgtatattatgattgctacgtaaatatcttccctcttcaattaaattaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29229978 |
atcatgtaacaaacttgtgattggaaggtgggaattttaaaacctcctctccgtatattatgattgctacgtaaatatcttccctcttcaattaaattaa |
29229879 |
T |
|
| Q |
249 |
attcattgttatcaatactcacacgagatgtacatacatgtgttagtttctgtattgattagttacaaaatcaaaagatcatgcaaatgaccttcagcct |
348 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29229878 |
attcattgttatcaatacccacacgagatgtacatacatgtgttagtttctgtattgattagttacaaaatcaagagatcatgcaaatgaccttcagcct |
29229779 |
T |
|
| Q |
349 |
atattctcaaggtattacggtattcactttgtt-ttttaattgaataataatagcaataatcttctt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
29229778 |
atattctcaaggtattacggtattcactttgtttttttaattgaataataatagtaataatcttctt |
29229712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 29230109 - 29230061
Alignment:
| Q |
18 |
tgtgtgtatgactcagattgaccttatttttctccatatggttgttaac |
66 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29230109 |
tgtgtgtgtgactcagattgaccttatttttctccatatggttgttaac |
29230061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University