View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_23 (Length: 411)
Name: NF15299_high_23
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Original strand, 21853428 - 21853812
Alignment:
| Q |
9 |
acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21853428 |
acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc |
21853527 |
T |
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| Q |
109 |
tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21853528 |
tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc |
21853627 |
T |
|
| Q |
209 |
acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21853628 |
acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata |
21853727 |
T |
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| Q |
309 |
aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacata |
393 |
Q |
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| T |
21853728 |
aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacata |
21853812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 32248668 - 32249037
Alignment:
| Q |
9 |
acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc |
108 |
Q |
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|||||||||||||||| || ||||| || | ||||| | ||| || ||||| |||||||| ||||||||||||| | |||| |||| ||||| || || |
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| T |
32248668 |
acatcatcatgctttgaattactgatcttatcaattgaactctacctgccattgagagcaatgaagctttccaagttgaaagcttcacgcaaatcttgtc |
32248767 |
T |
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| Q |
109 |
tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc |
208 |
Q |
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| |||||||||| | ||||||||||||||| |||| ||||| | || | ||||| || || |||| ||||| ||||||||||| | || ||| |
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| T |
32248768 |
tacaactggttgaaaatgagaagcttttggttttcctttgaaaatgagcacctccaagtaattgaaggggagggtgcctatgttgaaattcaggaactgc |
32248867 |
T |
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| Q |
209 |
acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata |
308 |
Q |
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|| | ||||| | |||| | |||||||||||||||| || || || |||||||||||||| || ||||| |||||||| ||||||||| ||||||| | |
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| T |
32248868 |
actgttctattcattctaatatttgaaatagagttggagtatatggttgactttgaacagtttatcacttggccagaattcagggcatatttatgaaaca |
32248967 |
T |
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| Q |
309 |
aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgt |
378 |
Q |
| |
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||||||| || ||||| | || |||| ||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
32248968 |
aatctttaaggttgtttaatcctgacattttacctttgcagaaaatcataagatcatctgcataaaatgt |
32249037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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