View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_27 (Length: 400)
Name: NF15299_high_27
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 9090814 - 9090614
Alignment:
| Q |
10 |
ggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgacaataacaatgc |
109 |
Q |
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| T |
9090814 |
ggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgacaataacaatgc |
9090715 |
T |
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| Q |
110 |
taacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttgaacttaaagca |
209 |
Q |
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| T |
9090714 |
taacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttgaacttaaagca |
9090615 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
9090614 |
a |
9090614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 254 - 384
Target Start/End: Complemental strand, 9090617 - 9090487
Alignment:
| Q |
254 |
gcaatagttaatcacggccgttgattcaacataatcacgcagttagtgtcatgcggtaaaatgatatcagtcaaagatccagatcaaacagctgggagtt |
353 |
Q |
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| T |
9090617 |
gcaatagttaatcacggccgttaattcaacataatcacacagttagtgtcatgcggtaaaatgatatcagtcaaagatccagatcaaacggctgggagtt |
9090518 |
T |
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| Q |
354 |
gtgtgacgctgttacattagggaatccaatt |
384 |
Q |
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| T |
9090517 |
gtgtgacgctgttacattagggaatccaatt |
9090487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 9095152 - 9094973
Alignment:
| Q |
18 |
tgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattga-tacaggtttgacaataacaatgctaacact |
116 |
Q |
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| T |
9095152 |
tgataccccacttaaatgtaggggcccaaaagtgaactgcacaaaataagtggtcaatttatacatcgattaca-gcttcacaatgtcaatattaacact |
9095054 |
T |
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| Q |
117 |
tgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttgaacttaaag |
207 |
Q |
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| T |
9095053 |
tgaaaacaacattggtgactggaaa-------gagacaacagtttgaatcaggtgaa---aatgtaatctatttggtacttgtacttaaag |
9094973 |
T |
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